Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02794 ATGATCAACCGTAAGTCTTATGTTTGCCTTGCAAAGGCAATTCCAGCTATGCTGGTGCTTTTGCTGGCTATGTCTGAAGGTATTTCAGGACTAACACAAGCCGAGGCTCTTCTTCGGTGGAAACAAAGCCTACCTGATCAACCCATTTTGGAGTCGTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACGTGTGATTCCCAAGGCAGTGTTACTGTCATAAACTTGTCTTATACTGGACTTGCAGGTACCCTTCAAAATCTCAACTTGTCTGTTTTTCCCAACCTTCTTCGTCTTGATCTCAAAGTAAACAACCTCACTGGCACAATACCAGAAAACATTGGGGTGCTCTCAAACCTTCAGTTTCTTGACCTTTCCACCAACTATTTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATGTGTCAAGAAATGATGTATCAGGGGTATTAGACCCTTCCCTGTTTCCTGATGGATCAAACAGCCCCAAAAGTGGCCTCATTGGTATCAGGAACCTCCTCTTTCAGGACACCCTGCTAGGTGGCAGAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTCTTAGCTCTTGATGGAAATAGCTTCGATGGCCCTATTCCTCCTTCTCTGGGCAACTGCACGCATTTAAGCATTCTCAGAATGCCTCAAAACCAACTCTCAGGGCCAATACCTCCCAGTATTGGGAAATTAACCAATCTAACCGATGTTCGCTTTTTCTCCAACAACTTAAATGGTACTGTTCCCCCAGAATTTGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTGGTTGGTGAATTACCACAAGAAGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGTCCTATTCCAAGAAGCCTTAGAGACTGTCCGTCCTTGTACAGGGTTCGACTTGAATACAACCGGCTGACAGGTTTTGCGGATCAGGATTTTGGAGTGTATCCCAACCTCACTTACATGGACTTCAGTCATAACAGGGTGGAAGGTGACCTCACTGCAAATTGGGGTGCCTGCAAAAACTTGCAATATCTCAGCATGGCTGGGAATGGAATAAGTGGCAACATTCCAAGTGAGATTTTTCAGTTGGACCAACTACAAGAGCTGGACCTATCCTCCAACCATATATCAGGAGAGATTCCTTCACAGATAGGAAATTCCTCCAACTTGTATCAATTAAATTTGAGTGGAAACAAACTTTCTGGCATGGTACCAGTAGAAATTGGAAAGCTTTCCAATTTGCGATCCTTAGACCTCTCTATGAACATGCTACTGGGACCAATCCCTAATCAGATAGGGGACATCTCAAACTTGCAGAATTTAAATCTTAGCAACAATAACTTTAATGGCTCAATCCCCTACCAAGTTGGAAATCTTGCATCTTTACAAGATTTTTTGGACTTGAGTTTCAATGCACTTTCAGGAGAAATTCCTTCTGATCTTGGGAAGCTTTCAAATTTGGTAAGCTTGAATATCTCTCACAACAATCTGACAGGTCCAATCCCTGACTCCCTCAGTAAAATGGTGAGTTTGTCAGCCCTCAACCTCTCCAACAACAATTTGGAGGGTCCAGTTCCCGAAGGTGGTGTGTTCAACTCTTCTCATTCCGTGGATTTGAGCAACAACGAAAATTTATGTGGAAACGTTCAAGGTTTGCGACCTTGTAATGTCTCTCTCACTAAACCTGATGGTGGTGGATCAAGTAACAAAAAGGTTGTGATCGCAGTAGTTGCATCCTTGGGAGGTGCTCTTATTATTTCTTTGGTGTGTGTTGGGATTGTTTTCTTTTGCTGCAAGAGAAAGTCAAGAGCTCGAAGACAAAAGAGTTCGATCAAAAAACTAAATCCATTTTCCATTTGGTACTTCAACGGCAGAGTTGTGTACGGAGACATAATTGAAGCCACCAAGAACTTTGACAACCACTATTGCATTGGGGAAGGAGCATTGGGAAAAGTTTATAAAGCAGAGATGAAAGGTCAAGTATATGCCGTAAAAAAGTTGAAGTGTGATGCAGAAAACTTAGACATTGAGAGTATAAAAACCTTTCAACATGAGGTAGAAGCGATGTCAGAAACACGCCACCGAAACATAATCAAGCTTTACGGATTTTGCTCTGAAGGGATGCACACATTTTTAATATATGAGTACATGAACAGAGGGAACTTATCAGACATGCTGAAAGATGACAAGGAAGCATTAGAACTAGATTGGCCTAAGAGGGTTGACATTGTGAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTTCTCCCCCTTTAATTCACAGAGACATATCAAGCAACAACATTTTACTCTCCTACGATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTCAAGCAGGATTCACCTATTTGGACATCATTTGCCGGTACATATGGTTATGCTGCTCCAGAGCTTGCATACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGTTTTGGAGTTTTGGCTTTCGAGATTCTCACAGGAAAGCACCCTGGTGATCTTGTTTCCTACATACAAAGTAGCAGTGAACAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGTCTCTCGACTCCTTCTAAGAACAATATTTTGAAGGAATTGGCATTGATTGCAAACCTTGCTCTTGCATGTTTACAAACCAATCCTCAATCTCGACCAACTATGCGATACATAGCTCAACTTCTTGAAATGGATAGTGCTGATATGAGATAG 2844 0.4198 MINRKSYVCLAKAIPAMLVLLLAMSEGISGLTQAEALLRWKQSLPDQPILESWVINSTATTQTPCSWRGITCDSQGSVTVINLSYTGLAGTLQNLNLSVFPNLLRLDLKVNNLTGTIPENIGVLSNLQFLDLSTNYFNGTLPLSIANLTQVFELDVSRNDVSGVLDPSLFPDGSNSPKSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNSFDGPIPPSLGNCTHLSILRMPQNQLSGPIPPSIGKLTNLTDVRFFSNNLNGTVPPEFGNLSSLIVLHLAENNLVGELPQEVCKSGKLVNFSAAFNSFTGPIPRSLRDCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSHNRVEGDLTANWGACKNLQYLSMAGNGISGNIPSEIFQLDQLQELDLSSNHISGEIPSQIGNSSNLYQLNLSGNKLSGMVPVEIGKLSNLRSLDLSMNMLLGPIPNQIGDISNLQNLNLSNNNFNGSIPYQVGNLASLQDFLDLSFNALSGEIPSDLGKLSNLVSLNISHNNLTGPIPDSLSKMVSLSALNLSNNNLEGPVPEGGVFNSSHSVDLSNNENLCGNVQGLRPCNVSLTKPDGGGSSNKKVVIAVVASLGGALIISLVCVGIVFFCCKRKSRARRQKSSIKKLNPFSIWYFNGRVVYGDIIEATKNFDNHYCIGEGALGKVYKAEMKGQVYAVKKLKCDAENLDIESIKTFQHEVEAMSETRHRNIIKLYGFCSEGMHTFLIYEYMNRGNLSDMLKDDKEALELDWPKRVDIVKGVASALSYMHHDCSPPLIHRDISSNNILLSYDLSAHVSDFGTARFLKQDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQSSSEQKINFKEILDPRLSTPSKNNILKELALIANLALACLQTNPQSRPTMRYIAQLLEMDSADMR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02794 947 FunFam MDIS1-interacting receptor like kinase 2 751 945 - -
Vimu5g02794 947 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vimu5g02794 947 ProSiteProfiles Leucine-rich repeat profile. 399 421 IPR001611 GO:0005515
Vimu5g02794 947 Pfam Leucine rich repeat 500 555 IPR001611 GO:0005515
Vimu5g02794 947 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Vimu5g02794 947 Gene3D Ribonuclease Inhibitor 176 305 IPR032675 -
Vimu5g02794 947 Gene3D Transferase(Phosphotransferase) domain 1 751 946 - -
Vimu5g02794 947 SMART serkin_6 672 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02794 947 SMART LRR_typ_2 469 493 IPR003591 -
Vimu5g02794 947 SMART LRR_typ_2 518 541 IPR003591 -
Vimu5g02794 947 SMART LRR_typ_2 445 468 IPR003591 -
Vimu5g02794 947 SMART LRR_typ_2 397 421 IPR003591 -
Vimu5g02794 947 SMART LRR_typ_2 542 567 IPR003591 -
Vimu5g02794 947 SMART LRR_typ_2 124 148 IPR003591 -
Vimu5g02794 947 SMART LRR_typ_2 277 301 IPR003591 -
Vimu5g02794 947 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 237 940 - -
Vimu5g02794 947 FunFam Predicted protein 177 265 - -
Vimu5g02794 947 Pfam Protein kinase domain 677 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02794 947 FunFam Nuclear pore complex protein NUP107 31 171 - -
Vimu5g02794 947 SUPERFAMILY L domain-like 47 387 - -
Vimu5g02794 947 SUPERFAMILY RNI-like 312 566 - -
Vimu5g02794 947 FunFam Leucine-rich repeat receptor protein kinase MSP1 634 750 - -
Vimu5g02794 947 Gene3D Ribonuclease Inhibitor 29 109 IPR032675 -
Vimu5g02794 947 Gene3D Ribonuclease Inhibitor 306 595 IPR032675 -
Vimu5g02794 947 ProSiteProfiles Protein kinase domain profile. 672 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02794 947 ProSitePatterns Tyrosine protein kinases specific active-site signature. 796 808 IPR008266 GO:0004672|GO:0006468
Vimu5g02794 947 Gene3D Ribonuclease Inhibitor 110 175 IPR032675 -
Vimu5g02794 947 SUPERFAMILY Protein kinase-like (PK-like) 646 941 IPR011009 -
Vimu5g02794 947 Gene3D Phosphorylase Kinase; domain 1 632 750 - -
Vimu5g02794 947 FunFam Leucine-rich repeat receptor-like protein kinase TDR 274 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02794 Vimu-Chr5 37393401 37397226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02794 17 844 Receptor kinase-like Gene Family AT4G08850 39.243 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu5g02794 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02794 - - gmx:100814345 1577.38