Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02793 ATGGCTAACTTTGGTTCTCCTGCAACTTACGTTGAGGACACACCTCCCACCAAGAAGCCTCGTGTTGTATGGGATGAAAAACGGCATGCTGCATTTGTCAGAGCTGTCCAGATAATTGGAATTGAAAAGGCTACGCCAAAGAAAATTCTTCAAATCATGAATGACCCTCGTTTGGAAAGAGCACATATTGCCAGTCATTTGCAGAAATACAGAAATTGTTTAAAACAGCAGCAAGAGAAACAGGAACAGCAACAAAATGACATGTCTGTCGTTTCAGGGAGACAAATAGAGCAACGACAATCGAAACTGAACATGTCATTGCCAAGGACGTCTGCATTGCAACCTTGTTCTGCTACTGCAATCACAAATTTTCATCCTGGTAACATGGAAGAGGAAGCTTTGGCACATGGTCATCCTTTAGCAGCCTTTCCTAACGTTGCCATTCCCGAGATTTTTTCAGAAGAACAATCAAATCTAAATAGACAACTGTCTAACAATTTTAATGCAGAGCAAGTTTTGGCACATGATCTTCCTTCAGCAACCTTTCCTAACATTTCCAGTAACCTGATATCTCAACTGGGAACTCTAGATGATGCTTCTCTATATGGATTACTTTCTCCATCTGATACACTGCTATTTGACAATCCCACTATGCTTCAGATAGATAATATGCAGCAGTCGATGAATCATAATCAAATGTATCCACTGAACTTTCAGCCATCTTCCACGATAATTTCTGGAAATCCAGCTTCTGCCTCCCAGACTTACAACTTTGGCATGAACATGGGTCATGGTTCTCAATCTATACAAGATGGAAATAGCATAGGTGAAGGCGTTCTTGATCAATATAGCACTAGAGATTCCATTTATCGTCCAGAGTTTCAAAATGCAGGTTTGCCAAGTGGTGCTGTCAGACGTTTTGCTGATGATAAATTCTATCAGAAATGA 948 0.4051 MANFGSPATYVEDTPPTKKPRVVWDEKRHAAFVRAVQIIGIEKATPKKILQIMNDPRLERAHIASHLQKYRNCLKQQQEKQEQQQNDMSVVSGRQIEQRQSKLNMSLPRTSALQPCSATAITNFHPGNMEEEALAHGHPLAAFPNVAIPEIFSEEQSNLNRQLSNNFNAEQVLAHDLPSATFPNISSNLISQLGTLDDASLYGLLSPSDTLLFDNPTMLQIDNMQQSMNHNQMYPLNFQPSSTIISGNPASASQTYNFGMNMGHGSQSIQDGNSIGEGVLDQYSTRDSIYRPEFQNAGLPSGAVRRFADDKFYQK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02793 315 Coils Coil 67 87 - -
Vimu5g02793 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Vimu5g02793 315 FunFam Two-component response regulator 15 78 - -
Vimu5g02793 315 Gene3D - 16 77 - -
Vimu5g02793 315 SUPERFAMILY Homeodomain-like 17 75 IPR009057 -
Vimu5g02793 315 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 268 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02793 Vimu-Chr5 37390048 37391175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02793 12 86 Response Regulator Gene Family AT3G16857 52.000 4.58e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu5g02793 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02793 - - vra:106778061 511.916