Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02791 ATGGCGAAAATTTCTTCAGAGAAGAAGATTTTCTGTGAATATCCATCAAATCTTAGAGTTCTTGCCATTGACACTGACCCTACAGTTCTTGAGTTCATCAAGAAAGTATGTAATGAATATTGCTATGAAGTTATCACATGCACAGAATCGCTACATGCCACTGTAATTTTGCAGGAAAAAAGGTCGACCATTGATTTGGTTCTGATGGAAGTTCATATGCCAAAGATGGATGGCTATGAATTCTTGCTTAGCACCCAAGAAATCGATGTTCCGAAAATCATGATGTCTTTCGATGAAAGCAAGAAATCTGTGATGAAGACTATCAAGCTTGGAGCTTGTGATTATATGATCAAGCCTTTGCATGAAGATCGACTGAGAAACATAGAAGTTGATAATGCTGGTGAATCAAAGAAGTCTCGTGTAGTATGGACAACAGAACTGCATGGTATATTTGTCAAAGCTGTGAATCAAATTGGACTTGCAAGTATGATTCTTCAGCCTTTAGCCTTTGCTCTATTTTCTTTTTCTATGTTCATCCAATATATGATTTAA 552 0.3659 MAKISSEKKIFCEYPSNLRVLAIDTDPTVLEFIKKVCNEYCYEVITCTESLHATVILQEKRSTIDLVLMEVHMPKMDGYEFLLSTQEIDVPKIMMSFDESKKSVMKTIKLGACDYMIKPLHEDRLRNIEVDNAGESKKSRVVWTTELHGIFVKAVNQIGLASMILQPLAFALFSFSMFIQYMI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02791 183 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Vimu5g02791 183 SMART REC_2 18 129 IPR001789 GO:0000160
Vimu5g02791 183 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 163 IPR045279 GO:0009736
Vimu5g02791 183 ProSiteProfiles Response regulatory domain profile. 19 133 IPR001789 GO:0000160
Vimu5g02791 183 Gene3D - 139 169 - -
Vimu5g02791 183 SUPERFAMILY CheY-like 16 127 IPR011006 -
Vimu5g02791 183 Gene3D - 17 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02791 Vimu-Chr5 37384000 37384842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02791 4 160 Response Regulator Gene Family AT4G31920 30.542 1.50e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g02791 Response_reg 9.9e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02791 - - vra:106778071 305.449