Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02783 ATGGAAGCGGCGGTGGTGGACGTCGGTTCTAAGCTCCTCAAAGCCGGTTTTGCAATTCCCGACCAGACTCCGGCCATGATAATTCCCACTAAAATGAAACAACTTCTTGATGATGGATCAGTTGCTGATAGTTCACTGGCTGAAAATGTCACTGTTGATCCAGTTGTGCGGGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCAGCATGTTTTATATACTGGTCTGGGATGGGAAATTGGCAACGAAGGTCAAATACTCTTTACAGATCCACTTTGTACCCCAAAGGCCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAACAAGCAGTGTTATCACTTTATGCTGTGGGACGTATCTCAGGCTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCATATTGCCTCAAGAAGATTTGAATTTGGAGGTATTGATCTAACTAATTTCCTAGCTCAAGAACTAGGCAAGACCAATCCAAAAGTAAACATCAGCCTGTCTGATGTGGAGAAAATGAAAGAGCAGTACTCATGCTGTGCTGTAGACGAGTTAGCTTATCAAAAGACCCAATATTTTTGTCCTGTGGAGGAGCATACCCTTCCTGATGGACAGGTGATAAGAATTGGGAGAGAAAGATTTACGGTCGGGGAAGCTTTATTTCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTAGAGAATACGGTGGTTTGTGGTGCCACTTCATCTATGGCAGACAATGTGCTTATATCTGGTTTTGAAGAGAGATTTCAGAAAGAATCTAGCTTAAGTTCATCTGCCGTTCAACCTACCCTTGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCAATACTTGCGAAAGTGGTTTTCCCTCAAAATCAGCATATAACCAAGGCAGACTATGATGAAACCGGACCTTCCATTATTCACCGTAAATGCTTCTGA 1104 0.4248 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTKMKQLLDDGSVADSSLAENVTVDPVVRGFIRDWDAIEDLLQHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKTNPKVNISLSDVEKMKEQYSCCAVDELAYQKTQYFCPVEEHTLPDGQVIRIGRERFTVGEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGATSSMADNVLISGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIIHRKCF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02783 367 PANTHER ACTIN 4 360 IPR004000 -
Vimu5g02783 367 Gene3D - 5 361 - -
Vimu5g02783 367 PRINTS Actin signature 45 67 IPR004000 -
Vimu5g02783 367 PRINTS Actin signature 125 144 IPR004000 -
Vimu5g02783 367 PRINTS Actin signature 100 113 IPR004000 -
Vimu5g02783 367 PRINTS Actin signature 217 233 IPR004000 -
Vimu5g02783 367 SUPERFAMILY Actin-like ATPase domain 131 367 IPR043129 -
Vimu5g02783 367 FunFam Actin-related protein 7 4 127 - -
Vimu5g02783 367 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Vimu5g02783 367 FunFam Actin-related protein 7 165 252 - -
Vimu5g02783 367 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Vimu5g02783 367 SMART actin_3 1 367 IPR004000 -
Vimu5g02783 367 Gene3D - 123 330 - -
Vimu5g02783 367 Pfam Actin 2 367 IPR004000 -
Vimu5g02783 367 Gene3D Actin; Chain A, domain 4 165 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02783 Vimu-Chr5 37333644 37338464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02783 5 367 Cytoskeleton Gene Families AT3G12110 36.031 5.27e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02783 K16615 - gmx:100813266 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02783 5 37333644 37338464 Vimu5g02783 5 37333644 37338464 ECH