Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02769 ATGCAAGAACTTGGACCCTTTAGAGTAAACAGTGATGGAAAAACACTGCACACAAATTCATTTTCATGGAACAGAGTTGCGAATGTTCTGTTCCTGGAGTCACCTGCTGGAGTAGGGTTTTCATACTCAAACAAATCAACAGATTATGCTACAAATGGAGATAAGAAAACAGCTGCAGATAATTATTTATTCTTGGTGAATTGGTTAGAGAGATTTCCTGAGTATAAAAACAGAGATTTCTTCATTGCTGGAGAGAGCTATGCTGGGCATTATGTGCCTCAACTTGCACACACCATTCTCCATCATAACAAAAAGGCAAATAAAGCAATCATCAACTTCAAAGGAATCTTGATTGGAAATGCAGTGATCAACGAAGAAACTGATTCGTCAGGACTGTACGATTTTCTTGCTAGCCATGCAATAATCTCAGATGAAGCAGCTTATATCAGTAAAGCTTGTGATTCCTCATCAAAGATTGCGAGCAGTCAGTGCGATGCAGCAGAAACAGAAATTGTCACTGATCCATGTAGTGAGTATTATGTGCATGCGTATATTAATAGAAAAGATGTTCAAGAGGCTCTCCATGCCAATGTCACCAATCTCAAATATGACTGGGAACCCTGTAGCGAAGTCATTACCAAGTGGGTAGATAGTGCTTCAACAGTTCTTCCAATTTTACACGAATTACTCAACAATGGCCTCAGGGTTTGGATTTTCAGTGGTGACACAGATGGAAGGGTGCCTATTACTTCAACCAAGTATTCGGTTAAGAAGATGGAGCTTCCCGTTGAAAAAGTTTGGCACCCATGGTTTTCCCATGGAGAGGTTGGTGGGTTTGCAGAAGTATATAAGGGAGGCCTAACATTAGCTACGGTGAGAGAAGCAGGGCATCAAGTGCCAAGTTACCAACCCGCAAGAGCCCTAACTTTGATCAAATATTTCTTAGACGGCACTCCTCTTCCTGGTCCTCCCAAAAGACATACCTAG 987 0.4144 MQELGPFRVNSDGKTLHTNSFSWNRVANVLFLESPAGVGFSYSNKSTDYATNGDKKTAADNYLFLVNWLERFPEYKNRDFFIAGESYAGHYVPQLAHTILHHNKKANKAIINFKGILIGNAVINEETDSSGLYDFLASHAIISDEAAYISKACDSSSKIASSQCDAAETEIVTDPCSEYYVHAYINRKDVQEALHANVTNLKYDWEPCSEVITKWVDSASTVLPILHELLNNGLRVWIFSGDTDGRVPITSTKYSVKKMELPVEKVWHPWFSHGEVGGFAEVYKGGLTLATVREAGHQVPSYQPARALTLIKYFLDGTPLPGPPKRHT 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02769 328 Gene3D alpha/beta hydrolase 1 320 IPR029058 -
Vimu5g02769 328 Pfam Serine carboxypeptidase 171 316 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 Pfam Serine carboxypeptidase 2 165 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 304 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 FunFam Carboxypeptidase 222 317 - -
Vimu5g02769 328 PRINTS Carboxypeptidase C serine protease (S10) family signature 19 31 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 PRINTS Carboxypeptidase C serine protease (S10) family signature 68 93 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 PRINTS Carboxypeptidase C serine protease (S10) family signature 287 300 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 PRINTS Carboxypeptidase C serine protease (S10) family signature 32 42 IPR001563 GO:0004185|GO:0006508
Vimu5g02769 328 SUPERFAMILY alpha/beta-Hydrolases 1 322 IPR029058 -
Vimu5g02769 328 ProSitePatterns Serine carboxypeptidases, serine active site. 82 89 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02769 Vimu-Chr5 37254515 37258812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02769 184 320 Calmodulin-binding Proteins AT2G22960 27.737 3.57e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02769 K16297 - gmx:100783864 570.466