Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02757 TTGTTGTTGTTGCTATCACTGCTCCATGAGTCTGGGACGAACCTTGTTGGAGTTATTCAGATTCACTTGGTTGAGATAAACGACGGCGATTTTAGACTGCGTTTTGGTGATTTTTTGAATATGAAGAGATTGAGGTCGAGCGATGATCTTCACTCGTACGGCGGCGAGAAGAATAGCAATGGTTGCAAGGATTCCGGTAATCTCAACCGTTCGTTTTCGTCGGCGCAGCGGAGTTTCTATTACAAGCCCGATAATGCGCGCAAGGGTTTGGTCTCATCTTCGTCGTCCCGGTACGAGAGGGATCGGACAGTTGAGGAGGACCGAGAGGGCTCGAGGGTGGTTCGGAAGCGATCTGAGCACGATTTCGAGGGATTTGATCGGAGGAAAGGGTTCGATCGGTATAGAGAGAGTGATCGGAGTTTGATGCACCGGTCGGAGAGTTTCTGCAGCGGTGGGTCGCGGAGGGATCAGTTTCCGAAGGGTTTTCGGTCGGAGAGGGAGCGGTCGCGTAGGGAGGGGAGTGTGTCGTCTTGGCGGAGAGGGTTGAAGGATTTGGATGAAAGGGAGAGGGTGGTGCGCTCGCCCAAGGGTTTGAGGGATGTGAAGTCTCCGTCTTGGTCCAAGGATTCTGTTTCGGAGAGTGAGCAATCTAAGAAGAGATCTTCTTCTCCCAGACCCTTCAGAGAGGGTAATTCCAACAAGTCTAAGTCTAAGTCTCCCACTTGTTCTAAGGATTCTGTTTCGGAGAGCGAGCAGTCCAAAAGTGTTGAGGTGAAGAAAGCTGAAGAGGAGTTATTGCAGCAGGTCCAGAGTGGGAGTAGCAGTGAGATGGAAGAAGGGGAGCTTGAACCTGAGCCCCAAACGGAAATGGTTGCTCCTACGAGTGAAGACTTGCCCCCATCTGTTACTTTGGAGACTGATGAGAGGCAAGTTCAGAAAAATGAATGTCACCCCAATGATGATGACACTGATGCTTTGATGGACGAGAGACACGAGTTGTCGACTGAGGAAGAGGTGAAACCTAACGAGGAGGTTGGTTTTGAGGTTAAGGATGCAGAGAAAGAGGCTGATGAGATGCCGGATGTCCAGGGTGATCCGACTGAGAAAATGGCTGTTACTGAAACTGAACTTGGTTCTGTGGGGAATGGTGATGACGATAAAACGGAGCAGTGTTTGGATGTCGGTGCTGGGTGCGAGGAGGAAACAAAGAAGGGTGGGGATGTGGAGAAGGAGAAACTGGTGTTGAATGAAGACGAGTCTAAAGAGGACAAGGGTGTAGATCTCGGAACCGGCACGGATGTTGTCAAACCTGAGTTAAATGACGGAGTGTCAACCGAAAATGAAGTCCTCAAGGAAGTGGACAGAGAAGTGACGATGGAGGGTGTGGCCAACAATGTCAAGGATAAGGGGAAAGGAATTTCTGTTGCACTTGCACCTCCTACTGATGTTGCTCATTCTTCGGATGATGGCTTGTGGATGGAAAGAGGATCGATGGACCTCCCAACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACAAGGGGATTTGAGTTGTTCTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTGGACCACTCGGTTCTCAACAAGAACAAGGATGACTTGGAGCAGCTTGATCTTACTCTTAGCTTGCCAAATGTTTTGTTACCTATTGGTGCTCATGAGACTGGAACTCATGAAACAACATCACAAGCCCCTGGATCCCCCTCTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGCACCAACTCAGATGGTTTTCCCGCATCAATGTCCCTTTCAGGTTCCCAATCATTTTATCATAATCCAAGCTGTTCGTTGACAAAGAACTCAGTGGACTATGAACAGTCAGTTGGCAGTCGCCCTTTGTTCCAGGGAATAGATCAAGTTTCCCAGGGGTGTTGGCAAGGTCAGTCTCAGAGTGATCCCAAACAGAAAGAAGTTCCGTTTGGTCAAAGAACCGCGGTTAATGCAAATGGCTCCCTTTTCCAGTCTCAGGCATCATGGGGTGTTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGAGTTCTAGAAGGAAGTTCAAAAGTTGCGGGTGGACTTGATAGGCAATTGAGTTTTCACAGGCAGTTTTCGGGGCAGTCAAGACGCCATGATGATGTTAGATCTCCGCCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTACAGCTTTGAGAAAAAGAGGGAGGTTAGAGACAGGAGTAGTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTTACGATGGGTGGAGCTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCATGCAATGTCCAGAAAATTTCATGAAATGACAGGACAGTCCATAGCATGTCTGAAGGAGGGTATTCGTGAAATCATGCTCAATGCTGATAAGCACGGGCAGATACTTGCTTTCCAAAAAGTTCTTCAGAACAGGTCTGATGTAATCTTGGATGTTCTATTGAAGTGCCATCGAGTGCAACTGGAAATTTTGGTTGCTTTGAAAACTGGTTTAACTCATTTCCTCCACATAGACAGCAGCATTTCGTCTTCTGAGTTGGCTCAAATTTTTCTGAACTCAAGGTGTAAGAATCTTTCATGTCGAAGTCAGATACCTGTAGATGAATGTGATTGCAAGGTTTGTGCGCAGAAGAATGGCTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCTAAGTTTGACAATGCCTCAAATACATGTAGCTGGGTGGGATGTGATGTTTGCCTTCATTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGGCTGAAATGCAGTTTCACTGCATTGCTTGTGACCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCATAATTTTGCAAAAGAATGGTCTGTTGAAGCCCTTTGCAGAGAGCTTGAATATGTGAAGAGAATATTTTCTGCCAGCAAGGATATGAGAGGGAGACAGTTGCATGAAATTGCAGAGCAAATGCTGCCGAGGCTGACAAATAAGTCTAATCTTCCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTCGGACGGTGATTCTTCCAAATTAGCCATGACAGCAAACTTTCCTGGGAAGGAGCAGATTAAAGAAAACAATGGAGTAGCAGGGCCTAGCCAGGAAGCAGCAGCTTGGATGAAGTCTATTTATTCAGAAAAGCCACCTCTGTTAGAAAGGCCTGTGAATATCCTTCCTACCTTTGACCAGAATGATAAAAGAACACTTGCGCAAGAGTTGCAGATGAGTAGCATCCAGAAGGACTACTGTTTTGACGAATTGGAGAGTGTAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAGGAAGAATATGCCAATCGAATTGCCAAGTTGCGATTGACCGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATCTGGAGTATTTAAACATGAAAAGGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAGCCTTGCCATGTGA 3699 0.459 MLLLLSLLHESGTNLVGVIQIHLVEINDGDFRLRFGDFLNMKRLRSSDDLHSYGGEKNSNGCKDSGNLNRSFSSAQRSFYYKPDNARKGLVSSSSSRYERDRTVEEDREGSRVVRKRSEHDFEGFDRRKGFDRYRESDRSLMHRSESFCSGGSRRDQFPKGFRSERERSRREGSVSSWRRGLKDLDERERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSPRPFREGNSNKSKSKSPTCSKDSVSESEQSKSVEVKKAEEELLQQVQSGSSSEMEEGELEPEPQTEMVAPTSEDLPPSVTLETDERQVQKNECHPNDDDTDALMDERHELSTEEEVKPNEEVGFEVKDAEKEADEMPDVQGDPTEKMAVTETELGSVGNGDDDKTEQCLDVGAGCEEETKKGGDVEKEKLVLNEDESKEDKGVDLGTGTDVVKPELNDGVSTENEVLKEVDREVTMEGVANNVKDKGKGISVALAPPTDVAHSSDDGLWMERGSMDLPTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNKNKDDLEQLDLTLSLPNVLLPIGAHETGTHETTSQAPGSPSQARSVQSLSNTFCTNSDGFPASMSLSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFQGIDQVSQGCWQGQSQSDPKQKEVPFGQRTAVNANGSLFQSQASWGVLDSQAVKGQHSRVLEGSSKVAGGLDRQLSFHRQFSGQSRRHDDVRSPPQSVGSHDIGSNYSFEKKREVRDRSSGSLYRTTSQKEQEQLTMGGADFVETIIARIVSEPVHAMSRKFHEMTGQSIACLKEGIREIMLNADKHGQILAFQKVLQNRSDVILDVLLKCHRVQLEILVALKTGLTHFLHIDSSISSSELAQIFLNSRCKNLSCRSQIPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMAEMQFHCIACDHPSEMFGFVKEVFHNFAKEWSVEALCRELEYVKRIFSASKDMRGRQLHEIAEQMLPRLTNKSNLPEVLRHIMSFLSDGDSSKLAMTANFPGKEQIKENNGVAGPSQEAAAWMKSIYSEKPPLLERPVNILPTFDQNDKRTLAQELQMSSIQKDYCFDELESVVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYANRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKRRMETDIKDLLSKMEATKMSLAM 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 380 429 - -
Vimu5g02757 1232 CDD PHD_OBE1_like 913 969 IPR047578 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 848 863 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 874 895 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 794 816 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1127 1147 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 920 940 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 990 1009 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1166 1188 IPR004082 -
Vimu5g02757 1232 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 833 848 IPR004082 -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 250 264 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 87 117 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 308 364 - -
Vimu5g02757 1232 Pfam PHD - plant homeodomain finger protein 883 1003 IPR032881 -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 190 441 - -
Vimu5g02757 1232 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 41 1229 IPR004082 -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 713 765 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 158 178 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 739 753 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 94 117 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 146 178 - -
Vimu5g02757 1232 Coils Coil 1133 1171 - -
Vimu5g02757 1232 MobiDBLite consensus disorder prediction 226 249 - -
Vimu5g02757 1232 Pfam Coiled-coil region of Oberon 1105 1220 IPR032535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02757 Vimu-Chr5 37165459 37169864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02757 883 1028 PHD Gene Family AT5G57380 26.712 2.20e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02757 - - gmx:100817003 1975.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02757 5 37165459 37169864 Vimu5g02757 5 37165459 37169864 ECH