Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02755 ATGGAGGAAGTTCAAGAGTCCCAACCCCAACCATCGCCTGGTCAAGAAGATGAAAACGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAGGGGAGCCAGCCCCAGAATTCAGTAGTAGCCCCCCAAAAGTTGACTCTGAAGTTGAGGTCCTTCACGAGAAGTCCATTACAGGGCTTGGTCTGAGAAAACACAGCACAAGTTTGAAGACACATGGCAGGAGCAAAGGCCAATTGAGATGGTCTTGGGTAAAGAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCATTGGTGCGTGTAGGCTGGGAGTTAGGATATGGAGAGGAAGGAAGCTTTTCTTTTCCAAACGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAACTCATTGGCTTCGATGAAACGAAAGAAGGAAAAGCTCGCAGTGATATGACCGTGGAAGAAAGGATTGGTGCAGCAGACAGGAGAAAGATGGATGGAAATGCTCTGTATCAGGAAGAAAAGCTAGAAGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAATATAGAGATATGGCTCTGGCTGTAAAGAATCCGTGCCATCTTAACATGGCAGCTTGTTTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTTTCTAAAGGCACGTAAACATGCCCCTCAAGACAAAGCAATTGCAAGAGAACTGAAATTGCTTGCTGAACATGACAAGGCCGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTGAACCAGTTCCTAAGTCAAGAAACTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCAATGGCCTTGTCAGCCTCTTCAAGCGTGAAAGGCTTAAATCTGACTAA 1047 0.447 MEEVQESQPQPSPGQEDENEVITESSAFVKGEPAPEFSSSPPKVDSEVEVLHEKSITGLGLRKHSTSLKTHGRSKGQLRWSWVKKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDAAREDFLKARKHAPQDKAIARELKLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKSRNWLILIWQWLLSVFNGLVSLFKRERLKSD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02755 348 SUPERFAMILY TPR-like 153 304 IPR011990 GO:0005515
Vimu5g02755 348 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 84 316 IPR039663 -
Vimu5g02755 348 SMART tpr_5 246 279 IPR019734 GO:0005515
Vimu5g02755 348 SMART tpr_5 161 194 IPR019734 GO:0005515
Vimu5g02755 348 SMART tpr_5 212 245 IPR019734 GO:0005515
Vimu5g02755 348 MobiDBLite consensus disorder prediction 1 22 - -
Vimu5g02755 348 FunFam Peptidylprolyl isomerase 146 274 - -
Vimu5g02755 348 MobiDBLite consensus disorder prediction 1 48 - -
Vimu5g02755 348 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 88 141 IPR001179 GO:0003755
Vimu5g02755 348 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Vimu5g02755 348 SUPERFAMILY FKBP-like 88 147 - -
Vimu5g02755 348 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 85 138 IPR001179 GO:0003755
Vimu5g02755 348 Gene3D Tetratricopeptide repeat domain 143 274 IPR011990 GO:0005515
Vimu5g02755 348 Gene3D - 45 142 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02755 Vimu-Chr5 37156907 37159978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02755 69 309 Calmodulin-binding Proteins AT3G25230 33.884 9.81e-31 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02755 5 37156907 37159978 Vimu5g02755 5 37156907 37159978 ECH