Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02745 ATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCTGCAGTTTCGACTTCTGATTCGGTGGCTTCATCCAAAGCTAACGGAGAGAAAGAGAAAGAGAAAGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGTGACCTCGAGGCTGCTACCAATGGCTTCTCCGACCGCAAGCTTCTCGGCAAAGGGAGTCATGGGTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCTGTGGCGGTGAAGCGGCCGTCGCGGCCGCATCATCACGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCGCTGGAGATCACCAACGAGGTGGACAATGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGGTTTACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAAGAGGATTCGTTTGGCTCTGCAGACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCTGTGATTCACCGTGACATTAAGTCTGCGAACGTTCTCATCGACCGCAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCCTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCTCCTGCAGGCACCATGGGCTATCTTGATCCTTGTTATGTAACTCCTGATAATTTGAGCACAAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCGATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCTATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCCAAGGATCCGGTTGTGAGGAAGCAGTTGGCTGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAAGGAGGTTGTTGCTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGACCCGTCGAAGCAAGAAATGGTGAATTCAATTCAAGGCTGGCAGGTTTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAATCTGCAATGAGGTATTCCCGGAGGGTGTATTCTGATTTGGGCTTCAGCAGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTGAGAGATGCTGATGGGATGGAGCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAGGCCATGTGGCAGTGACAAGGACGCCTATGGCTTCAGTAAAAGCCAGATTGTAGGTCAGACTGAGACCACTTCAAAACAAGACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTCTCCGGTTGCCGAGGTTGTCTAG 1512 0.496 MGYLYLSCRAESAVSTSDSVASSKANGEKEKEKERSGIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVPRPVSSSAPLEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGKRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMKEVVAWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGEFNSRLAGLEEGNIEALDGRLSKSAMRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDADGMEHSSKSAEQVSSSRFGSGRYSIRGRNLYRPCGSDKDAYGFSKSQIVGQTETTSKQDEVSGSNSKNLNSPVAEVV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02745 503 MobiDBLite consensus disorder prediction 471 503 - -
Vimu5g02745 503 SUPERFAMILY Protein kinase-like (PK-like) 38 334 IPR011009 -
Vimu5g02745 503 Pfam Protein kinase domain 56 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02745 503 Gene3D Transferase(Phosphotransferase) domain 1 144 342 - -
Vimu5g02745 503 MobiDBLite consensus disorder prediction 12 36 - -
Vimu5g02745 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vimu5g02745 503 PANTHER OS01G0253100 PROTEIN 20 336 - -
Vimu5g02745 503 MobiDBLite consensus disorder prediction 463 503 - -
Vimu5g02745 503 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524
Vimu5g02745 503 FunFam Serine/threonine-protein kinase-like protein 144 347 - -
Vimu5g02745 503 ProSiteProfiles Protein kinase domain profile. 55 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02745 503 Gene3D Phosphorylase Kinase; domain 1 25 143 - -
Vimu5g02745 503 SMART serkin_6 55 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02745 503 FunFam Serine/threonine-protein kinase-like protein At1g28390 24 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02745 Vimu-Chr5 37111120 37112631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02745 3 334 Receptor kinase-like Gene Family AT3G59420 42.442 1.08e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu5g02745 Pkinase 8.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02745 - - vum:124832395 975.696