Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02736 ATGAAAGCAGAAGCTGCGGGCGTGTTGTTCACTCTCGAGTCGAGAGAGGGTCCCAGAGAGGTTATGGAGCTTCATAGTGAGTGGGAGAGTGTGAGAGAAGAACAAAATATTGGGTTGATGGTTGAGAACCCCATAAAAACACATAAGGAGAACTTGGGGAATTCGTGTTTCTTCTGTGCTGCTTCTATCTGCAACCATGTTATAAATAAGGCGGTGGAATATGAGAAAGAAACTCACTGTGCCACTACTCATCCCAAGTTGGTAGGTAGGGCTTGTGTGGTTGAGAAAGAAACTTTTCTTGTACCAGGATTTGCTGTGGAGCTGAAGTTCCAATCTCTTTGTTCAATCATGGATGGTTACGAAGCTACAAGAATTGTGTTTGCTAGGATCCAAAACTTGGACCCTGAAAATGCATCCAAAATCATGGGTGTACTTCTTCTTCAGGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCACTTGTTCACTCTGTGATTCTAAAAGCACGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACGCCCTCTACTCCTCCTTCTCCTTCGCCCTTCCTTTCGAGGCAAAGCTCCACTTCTTCCAGGCTTGGTGGTATCAACCTACCTTCTGCTCTCACCATTCCAAACCCTTCTTCCACTTCTTCTTCGTGGCCTACTATGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGCCCCAACCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTACCCTTTTATGTCAACGGAGGCTCAGATCCAATTGATGACTTTCAACTTCAGGATCAGCTGTCTTTCCTTAATGATGGTTCTCCTACTAGTACTGCTCTTGCTCACAAGAGCAACCCAGATTTGTTTTACCCAACTCACTCGGACATGTCCTCAAGTCCTACCGGTGTTGCTGACCCTGCTCTCTTTCCTTCCTACGGTTGGGGAGGGTCCCTTCATCGAAGGAGTTGCTCGGTCAATGATGCTTGTTTGGGTTCTGAGGACCCGAACTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAGAATGGGACAAGTTGCAGGTTCCTTCATAGTGGACTTGGAGATGCAGATGGTGCTGCTGCAATGGTAGGGTCTCCAAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGGCTCTCCAACTTTTCCATACTCGCCTAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAACGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACATTTCCAGCAGACAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGGTTATTGTTGTTTAGTTTTAGCCTTAGCTGGGGTCAGGAGGAGTATTTTGGCATTGGCAGAATCATTAACTTAGTTTTAATTCTGTGGTTGAAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATACTGTGAAGCTCATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCGGACAAGAAGCAGCAGCAGGTAGACAGAGGAGATTTTTCACCATGTGGTACTCCTACCGGACTAGAGGCCAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAGGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTCAATCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGGCCCCAAATGCTAGTACTACATCAGTTTCAGCTGGTCAGCAGCCGGTCAACATATCTGTTGGCAAGGAAATGGTGGTCAACGGGGAGAATGGATATGATGAAGGCAATGGGAAGCAGAGCCCTAGACATGAAGATCGTGAATTGCAAGAATGTTTGGAGCACAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGCTTCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCAAGTGCATCTGCCAACTCTAAATTTGGTACTAGCGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTAGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGAGCAATTGGCATTTAG 2508 0.4633 MKAEAAGVLFTLESREGPREVMELHSEWESVREEQNIGLMVENPIKTHKENLGNSCFFCAASICNHVINKAVEYEKETHCATTHPKLVGRACVVEKETFLVPGFAVELKFQSLCSIMDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLGGINLPSALTIPNPSSTSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGSDPIDDFQLQDQLSFLNDGSPTSTALAHKSNPDLFYPTHSDMSSSPTGVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHSGLGDADGAAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMGSPTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFRLLLFSFSLSWGQEEYFGIGRIINLVLILWLKHLWPSPRREDPIPAEANTVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLEARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVLPSFHTSSEAPNASTTSVSAGQQPVNISVGKEMVVNGENGYDEGNGKQSPRHEDRELQECLEHNLPDSPFASPTKAAGDFMASFSNGPNEAIDADASSASANSKFGTSALLPPASALDMGTFKSYNCQIPRFSSSHGTIGMLAGTGGAIGI 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02736 835 SMART c3hfinal6 350 374 IPR000571 GO:0046872
Vimu5g02736 835 MobiDBLite consensus disorder prediction 177 232 - -
Vimu5g02736 835 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 373 IPR000571 GO:0046872
Vimu5g02736 835 SUPERFAMILY CCCH zinc finger 351 373 IPR036855 GO:0046872
Vimu5g02736 835 ProSiteProfiles Zinc finger C3H1-type profile. 348 375 IPR000571 GO:0046872
Vimu5g02736 835 MobiDBLite consensus disorder prediction 720 739 - -
Vimu5g02736 835 Gene3D - 343 412 - -
Vimu5g02736 835 MobiDBLite consensus disorder prediction 195 232 - -
Vimu5g02736 835 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 117 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02736 Vimu-Chr5 37046256 37050461 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu5g02736 zf-CCCH 6.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02736 - - gmx:100801341 1120.92