Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02734 ATGGAGAAGTACCTGAGAGAAAACTTCAGCGTCCAGCCGAAGAACCCTTCGGAGTCCGCCCTCCGCCGATGGAGATCCGCCGTCTCCGTCGTCAAAAATCCCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGCCCAACGCGCCGAAGCGGAACACAAGCGTAGAAAGCTCCAGGAAAAAATACGGGTGGCTCTCTATGTTCAAAAAGCAGCGTTGCATTTTATTAACGCTGGGAACCGTCGTGATGGTGATGGTGGTGACGGCGGAGGTAAAGGTGTTGGTGTCGGTGGCGACACCGGTGATGGTCATGGTTACACGCTCTCAAAAGAGACTCGGGAAGCAGGCTTCGAAATTGAGCCCGACGAATTAGCCTCCATTGTTCGATCCCATGACGAGAAATGTTTAGAACGCTACGAAGGAGTGGAAGGAGTAGCAAAGGTTGTTCGTGTGTCCTTGCAAGAGGGCGTTATTTCGGTAGATGTTGAGCACAGACAAAATATCTATGGTTGTAACCGGCATGCCGAGAAGCCCCCCAGAAGCTTTTGGATGTTCGTGTGGGATGCAATGCAGGACTTAACTCTAATCATCCTTATGGCATGTTCATTCGTTTCAGTTGGCGTTGGAATTTTAACCGAAGGTTGGCCAAAAGGTATGTACGATGGAGTGGGAATCATACTATCTATACTTTTGGTGGTTTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTCAAGGACTTGGATAAAGAAAAGAAAAATGTCAGCATTCAAGTTACAAGAGACGGTAGAAGGCAAAAGGTTTCAATTCATGATCTAGTGGTAGGAGACATGGTCCATCTTTCAATAGGAGACGTAGTTCCTGCAGATGGGTTATTGATATCTGGTTTTGGCTTATTAATAGACGAATCAAGTCTATCAGGTGAGAGCGACACTGTAAATGTTGATAATCAGAAGCCTTTTCTTCTTGCTGGGACCACAGTGCAAGATGGGTCTGCAAAGATGTTGGTCACGTCCGTTGGTGTTAGGACGGAATGGGGAAGATTGATGGATACTCTGAACGAAGGAGGAGATGATGAGACACCACTTCAGGTCAAACTAAATGGAGTTGCTACCATTATTGGTAAGATAGGCTTGGGTTTTGCCCTTCTCACGTTCGTAGTTCTGACGGGCAGATTTTTGTTGGGGAAAATAGCTCACCATGAAATCACAAAATGGTCCCTAAATGATGCATCCAAGCTTCTCAATTTCTTTGCCACCGCCGTCATTATTATAGTTGTGGCAGTTCCCGAGGGGCTTCCTTTGGCAGTCACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTGGTCAGGCATCTCTCCGCATGCGAGACCATGGGTTCAGCAAGTTGTATTTGCACTGATAAAACGGGAACTTTGACTACAAATCACATGGTTGTAGACAAAATATGGATTTGTGGACAAACTAAGGCCGTTAAAAGCGACCACAGTGAAAATTTGTTGAAGCCCTTGATTTCTGAACAAACATTTGATCTTCTTTTGCAATCCATATTCCAGAATACTGGCTCAGAGATAGTCAAAGGGCTAGATGGAAAGAACAAGATCATGGGTACCCCCACAGAATCCGCTTTGTTGGAATTTGGCTTGCTTTTGGGAGGTGATTCCAAGTTTTATAACGACAAGTATAAAATAGTAAAGGTTGAACCTTTCAATTCAACCAGAAAAAAGATGTCAGTGCTGGTGTCTCTTCCCGGTGGCACCAATAAGTATCGAGCATTTTGCAAAGGAGCATCAGAATTGGTTGTGAAAATGTGCGACAAAGTTGTCGACACAGACGGCAAAGTGGTCCTTTTGAACGAACAACAAAGGAGTAACATCACAGAAGTTATCAACGGCTTTGCTTCTGATGCTCTGAGAACACTCTGCATTGCCTTCAACGATATTGAAGGATCTTCTGAACGCGGTCGTATTCCTGAGGACAAATACACGTTGATATCTATTGTTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAAGAAGCTGTCAAGACTTGTTTAGAAGCTGGCATTGTCGTTAGAATGGTGACTGGTGACAACATAAACACTGCCAAAGCAATAGCTAGAGAATGCGGCATACTAACAGATGGAATTGCGATAGAGGGACCAGATTTCCGGAACAAGTCCCAGCAAGAACTGGAAAAGATAATACCGAAAATACAGGTAATGGCCCGATCTTTGCCCCTTGACAAGCACAAATTAGTGACCCATTTGAGGGAGGATTTTAACGAGGTTGTCGCAGTAACTGGCGATGGAACCAATGATGCCCCAGCGTTGCATGAAGCTGATATTGGACTTGCCATGGGCATTGCAGGGACAGAGGTTGCCAAAGAGAACGCGGATGTGATTGTAATGGACGATAACTTCTCAACCATAGTGAAGGTTACCAGATGGGGGCGTTCTGTGTATATTAATATACAAAAGTTTGTTCAGTTCCAGTTAACAGTTAACGTTGTAGCTCTCATGCTGAATTTCGTTTCAGCCTGCGTGTCAGGCTCTGCTCCTCTCAGTGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTCGGCGCGTTGGCACTGGCTACAGAACCTCCTCATGATGGGCTGATGAAGAGGCCCCCTATAGGAAAAAACGCAAAATTCATCACCAGGATCATGTGGAGGAACATAATCGGTCAGAGCATCTACCAAATTATGGTCCTTTTGGTTCTCAAATTTCGTGGCAAACAGATTCTCAAGCTCGATGAACACGACGATACTACCTTGCTTCTGAACACAGTCATATTCAACAGCTTCGTATTCTGTCAGGTGTTCAACGAGATAAACAGCCGTGACATGGCGAAGATCAATGTTTTTGAAGGCATGATAAGCAGCTGGGTGTTCCTTATAGTGATGGGCATAACGATATGCTCTCAAGCCTTGATAGTTGAATATCTTGGAGCTTTTGCCCAAACGGTACCGCTCAGCCGGGAACTGTGGTTTGTAAGCGTCATGATTGGTGCGGTGAGTTTACTCGTAGCCGTTCTCCTCAAGTGCATTCCGGTACCATCCAGCACCTACGTCGCCGCCGCCACCCACCATGACGGTTACGAGCAGCTCCCCACTGGCCCTGATCTCGCTTGA 3186 0.4583 MEKYLRENFSVQPKNPSESALRRWRSAVSVVKNPRRRFRMVANLAQRAEAEHKRRKLQEKIRVALYVQKAALHFINAGNRRDGDGGDGGGKGVGVGGDTGDGHGYTLSKETREAGFEIEPDELASIVRSHDEKCLERYEGVEGVAKVVRVSLQEGVISVDVEHRQNIYGCNRHAEKPPRSFWMFVWDAMQDLTLIILMACSFVSVGVGILTEGWPKGMYDGVGIILSILLVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTRDGRRQKVSIHDLVVGDMVHLSIGDVVPADGLLISGFGLLIDESSLSGESDTVNVDNQKPFLLAGTTVQDGSAKMLVTSVGVRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFVVLTGRFLLGKIAHHEITKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICGQTKAVKSDHSENLLKPLISEQTFDLLLQSIFQNTGSEIVKGLDGKNKIMGTPTESALLEFGLLLGGDSKFYNDKYKIVKVEPFNSTRKKMSVLVSLPGGTNKYRAFCKGASELVVKMCDKVVDTDGKVVLLNEQQRSNITEVINGFASDALRTLCIAFNDIEGSSERGRIPEDKYTLISIVGIKDPVRPGVKEAVKTCLEAGIVVRMVTGDNINTAKAIARECGILTDGIAIEGPDFRNKSQQELEKIIPKIQVMARSLPLDKHKLVTHLREDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFSTIVKVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLSAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGKNAKFITRIMWRNIIGQSIYQIMVLLVLKFRGKQILKLDEHDDTTLLLNTVIFNSFVFCQVFNEINSRDMAKINVFEGMISSWVFLIVMGITICSQALIVEYLGAFAQTVPLSRELWFVSVMIGAVSLLVAVLLKCIPVPSSTYVAAATHHDGYEQLPTGPDLA 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02734 1061 Gene3D - 155 355 - -
Vimu5g02734 1061 SUPERFAMILY HAD-like 471 879 IPR036412 -
Vimu5g02734 1061 Pfam Cation transporting ATPase, C-terminus 859 1033 IPR006068 -
Vimu5g02734 1061 Pfam E1-E2 ATPase 257 450 - -
Vimu5g02734 1061 PANTHER CATION TRANSPORTING ATPASE 109 1036 - -
Vimu5g02734 1061 Coils Coil 40 60 - -
Vimu5g02734 1061 PRINTS H+-transporting ATPase (proton pump) signature 632 650 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g02734 1061 PRINTS H+-transporting ATPase (proton pump) signature 806 831 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g02734 1061 PRINTS H+-transporting ATPase (proton pump) signature 774 790 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g02734 1061 Gene3D - 187 1034 - -
Vimu5g02734 1061 FunFam Calcium-transporting ATPase 668 819 - -
Vimu5g02734 1061 Gene3D - 482 679 IPR023299 GO:0000166
Vimu5g02734 1061 FunFam Calcium-transporting ATPase 482 679 - -
Vimu5g02734 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 478 684 IPR023299 GO:0000166
Vimu5g02734 1061 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Vimu5g02734 1061 PRINTS P-type cation-transporting ATPase superfamily signature 672 683 - -
Vimu5g02734 1061 PRINTS P-type cation-transporting ATPase superfamily signature 798 810 - -
Vimu5g02734 1061 PRINTS P-type cation-transporting ATPase superfamily signature 303 317 - -
Vimu5g02734 1061 PRINTS P-type cation-transporting ATPase superfamily signature 472 486 - -
Vimu5g02734 1061 PRINTS P-type cation-transporting ATPase superfamily signature 694 704 - -
Vimu5g02734 1061 PRINTS P-type cation-transporting ATPase superfamily signature 774 793 - -
Vimu5g02734 1061 CDD P-type_ATPase_Ca_PMCA-like 161 907 - -
Vimu5g02734 1061 Gene3D - 16 76 - -
Vimu5g02734 1061 FunFam Calcium-transporting ATPase 234 355 - -
Vimu5g02734 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 474 480 IPR018303 -
Vimu5g02734 1061 NCBIfam HAD-IC family P-type ATPase 224 499 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g02734 1061 NCBIfam HAD-IC family P-type ATPase 740 857 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu5g02734 1061 NCBIfam calcium-translocating P-type ATPase, PMCA-type 129 1036 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu5g02734 1061 SFLD p-type atpase 454 826 IPR044492 -
Vimu5g02734 1061 Pfam haloacid dehalogenase-like hydrolase 470 788 - -
Vimu5g02734 1061 SUPERFAMILY Calcium ATPase, transduction domain A 257 353 IPR008250 -
Vimu5g02734 1061 FunFam Calcium-transporting ATPase 16 76 - -
Vimu5g02734 1061 FunFam Calcium-transporting ATPase 791 1038 - -
Vimu5g02734 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1035 IPR023298 -
Vimu5g02734 1061 SMART Cation_ATPase_N_a_2 137 209 IPR004014 -
Vimu5g02734 1061 Gene3D - 469 819 IPR023214 -
Vimu5g02734 1061 MobiDBLite consensus disorder prediction 77 104 - -
Vimu5g02734 1061 Pfam Cation transporter/ATPase, N-terminus 139 204 IPR004014 -
Vimu5g02734 1061 SFLD Haloacid Dehalogenase 454 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02734 Vimu-Chr5 37033386 37039109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02734 57 1058 Primary Pumps ATPases AT3G57330 67.398 0.0 1365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02734 K01537 - gmx:100805063 1777.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02734 5 37033386 37039109 Vimu5g02734 5 37033386 37039109 ECH