Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02731 ATGGCCAAGAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTTTGAGGGATCCCACACAAGATAAGGATAAAAGAAGGAAATGGATATTTGGAAGGCTAAAGAACAAGAGATTACCCTCAATTACAGCTCCACTTCCATCAAAAGAGACAACACTAAGCGAAGCAGAGGAAGAACAAAGCAAGCATGCTTTAACAGTGGCCATTGCCTCAGCAGCAGCTGCTGAAGCTGCTGTTACTGCTGCACATGCTGCTGTTGAGGTTGTTCGCCTCACTGGGGTCTCACAATCTGCCCTTATTTGCAAAGAAAAGTCAGAAGAATCTCAACCTCTCAAAACTAGTAATGCTGCTCCTCAATTCACACACCAGTGCAAGAGGGACATTCAAGAATCTGCTGCAGTCATCAAAATTCAAACTGCATTTAGGGGTTATCTGGCAAGAAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAACTACAAGCTATCATTCGTGGCAGAGCAGTAAGACGCCAAGCTATGAGTACTCTTAAGTGCTTGCAGTCCATTGTGAGCATCCAATCACAGGTCTGTGCAAGGAGGCTTCAAATGGTTGAAGGGAGATGTGACTACACTGAAAATGAAGAGTTGCATGATTCAAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGTGATGAGAGCACTCCATCGAAGGAAGAGTTAGACAGCTCTTGCATAAGCATGAAAGAAACAGTTCTCAAGAGAGAAAGAATAAAAGAATACTCATTTAACCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTAAATGGAAGATGGAGATACTGGCTAGAGCAGTGGGTAGATACACAACTTTCAAAGAGCAAAGAACTTGAAGATTTAGACTCAATTTTTAGCTCTCATGCTAGGAGTGGGGATGAATATGGAAGCAGACAACTTAAGGTGAGAAGTATTAACAGGCAAAATCCAGTTGAAGGATTGGATTCTCCTACAATTGGTTCAAGAAGATCTTTTCCTCATAGGAGACAGTGTTCTGTGGGAGAAGACCAGTCATTTTCAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACAGAATCAGCCAAAGCAAAAGCAAGATCAACAAGCTCACCAAAAATAAGGACAGGGGGGAACATTGACATGAATTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCCATTGCATCTTCCATTAACAGTGAGGTGCTTAGTGGTGGTAGGATGGCCAAGTTTAGTGGTAACCAGCAAAGATCTCCAAGCTTTAAGGGCCTTTCAGTGCCTATAAAATCAAGCCGAACTATCAAGGATCTCAGTATTAATTCAGATTGTTCACTGCCTAATTGGGGTCCTCAAGGTTCCTTCAAATGA 1401 0.4233 MAKKKSWFSLVKRLFLRDPTQDKDKRRKWIFGRLKNKRLPSITAPLPSKETTLSEAEEEQSKHALTVAIASAAAAEAAVTAAHAAVEVVRLTGVSQSALICKEKSEESQPLKTSNAAPQFTHQCKRDIQESAAVIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLQMVEGRCDYTENEELHDSKDKIIRMDSNSERKCDESTPSKEELDSSCISMKETVLKRERIKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSIFSSHARSGDEYGSRQLKVRSINRQNPVEGLDSPTIGSRRSFPHRRQCSVGEDQSFSSSPATPAYMAATESAKAKARSTSSPKIRTGGNIDMNSDSYSPCKKKLSIASSINSEVLSGGRMAKFSGNQQRSPSFKGLSVPIKSSRTIKDLSINSDCSLPNWGPQGSFK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02731 466 SMART iq_5 129 151 IPR000048 GO:0005515
Vimu5g02731 466 MobiDBLite consensus disorder prediction 324 394 - -
Vimu5g02731 466 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Vimu5g02731 466 MobiDBLite consensus disorder prediction 372 394 - -
Vimu5g02731 466 Pfam IQ calmodulin-binding motif 132 151 IPR000048 GO:0005515
Vimu5g02731 466 MobiDBLite consensus disorder prediction 347 364 - -
Vimu5g02731 466 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vimu5g02731 466 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Vimu5g02731 466 Pfam Protein of unknown function (DUF4005) 351 432 IPR025064 -
Vimu5g02731 466 Gene3D - 129 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02731 Vimu-Chr5 37017805 37019856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02731 1 466 IQD Protein Family AT5G13460 45.697 7.60e-112 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02731 - - gmx:100800192 743.421