LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02730	ATGGAAGAGAGCGTAGTTACCTTTGTTTTAGACCATTTAGCTGAGCTTGTGGCACGCGAAGTTAACTTGCTGTATGGCGTTGAGGATAGAGTCCAGTCCCTCCAGTACGAACTTCAAATGATCAAAGAGCTTCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATGTTGTACTGAACCAAATCAGAGATGTGGCCTACGTAGCTGAGGATGTCATCGATACATTCGTAGCCAAAGTTGCCATTTCCAAGAGAAGAACCATTCTGGGGAGGATGCTCCGTGGCTTTGGTCGATTAAGGTTGCTCCACCACGTAGCCGAAAAAATAGACATGATCAAAGCCACTCTCAACGAAATACGCGTCAACAAGGACAAATATGATGCTTTCAAAGAAACCAATAATAATCAATCCGCAGCAGAAGAGGCGGAGGAGGAGAAAAGGGCGCAATCACTACAAAAGCTAAGAAGAAATGTGGAGGAAGATGTAGTTGGCTTTATCCATGACTCCAAGAATATCATCAACCTACTCCTGGAAGGTGGTTCAAATCGTAAAGCTGTCTCTATTGTTGGCATGGGGGGATTGGGAAAGACCACTCTTGCCCGAAAGGTCTATAACTGCAGCCAAGTAAAGCAACACTTCATGTGTCGGGCATGGGTTTATGTGTCAAATGAGTGCAAAGTTAAGGATCTTTTGATTGGCCTTTTTAAGCATTTGATGCTAAATTTTGAAGAGCAACAACGTAAAGGAAACGAAAGGGGTAAAAAAAACGCAGGAGACGTTAACGACCTTAGTGAGGAGGAACTGAAGGAATTGGTGCGAAAGTGCTTGGAAAGGAAAACGTATCTTGTTGTGGTAGATGACCTGTGGAAAAAGCAAGATTGGGACGAAGTGCTAGATGCTTTTCCGGACAACAACAAAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGCCATGATGTTCCTCACTATCTTCAATTCCTGAATGAAGAAGAAAGTTGGGAATTGTTTCGCAGGAAAGTGTTTAGGGGTGAAGACTACCCTTCTGATTTAGAGCTTTTGGGGAAGCAGATGGTTCGAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTCTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCACACAGAGAATGGTCTAAAGTGGTGGGTCATGTTAATTGGTATCTCACTCAAGACGAGACCCAAGTGAAGGATATAGTTCTGAAACTCAGCTACGACAACTTGCCAATGAAACTAAAACCATGTTTTCTCTATCTTGGGTTATTCCCTGAAGACTTTGAAATACCTGTTATTCCATTATTGCAAAAATGGGTAGCAGAGGGCTTTATACAAGATACGGGGAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAAGTAACAAGAGTGAATTTTAATGGAGGTTTGAAGACGTGTTATGTTCATGATCTTCTACGAGATCTCTGCATAGCAGAGAGCAAAGAGGATAAAATGTTTGAAGTTTGCACAAATTATAACATTTTAATCCCTACCAAACCTCGCAGACTGTCCATTTACAGTGACATGGGTCACTACATTTCTTCAAGCAATAATGATCACTCATGTATTCGTTCCTTGTTTTTCTTTGGGCCACGTTATGATGTTCGTAGGAGAGAGTGGAAATGGCTTTTGGAGAACTTCAAATTGGTTCGAGTGTTAGAGTTTGGACCTAACAGATGCCAAAAGATCCCTTCCAATTTAGGGAATTTCATCCACTTAAGGTACTTGAGAATAAACTCAAAGCATGTTACATTTGTTCCTGATTCAATACTGAACCTTTGGAATCTACAAGCCATAGACCTGGGTATTTGGAAGCATGACGATCCAATTTCTTTCCCTATTCAAATGTGGAAACTCAAACATTTAAGGCATTTGAATACACAAGGGCCTATCAAGTTGCGAGGAAGATGTTCACCATCCTCATATGAGAAGATGTGGAATCTTCAAACCATCCCTCCCCTTGTACTCAATGCGCAAGCAACGTCTCTAATAGAGAAAGGAATATTCCCCAATATTAAGAGTATGGGGTTGGATGTGAAGGATCATGGTTATGAAGGTAAATTTCCCAATTTATTGCAGAACCTACAACAATTAATGCATTTGAATAAATTGGTGATTTTGTTAGGTTCCAAGCCCCGAGAACTGGTTCAAAACCTAGGACAATTAAGTTGTCTAACTATCTTAGTGATTGATAATGTTTTGACCCTTCTAGCCTCTGAAGTCATATTTCCTCCAAACATTAAAGAGCTAACGTTGTCATGGATTAAGTACATTACTCATGAGGGCATTAATAGTCTGGGAAATCACTCCAAACTCAAATTTTTGAGACTTTTGGGAAATCCACTTTCTGAATATTCCTTTGACTTTAATTGTGTCGGTGGCAGTTTTCCGCAACTGGAAGTGTTGCAAATGGAATATTTGAAACTTCGAAAGTGGAAATTAGGCAATGGTGCAATGCAGAGGCTTCAAAATGTGATTATCCACAAATGTCAATCATTAGATAATCTCCCGACTGAATTATGTTCTTTGAATAGATTGAGAAAAGTGCATATAACGAACTCTCCTTCAAAACAAATGACTCATATCTTAGGAATTTTGGAAACAAATAATGGAGTTCAAGTCGTTATAGGGGATTCTTCACCTTGGTATGACGACATTTATTTCAAACTATTTCTTGCGCATAAGGCGGCAGTAGATTTTATGCGACACATATCTCAGCAGTCGTGA	2817	0.4068	MEESVVTFVLDHLAELVAREVNLLYGVEDRVQSLQYELQMIKELLNTTKRKKGMEHVVLNQIRDVAYVAEDVIDTFVAKVAISKRRTILGRMLRGFGRLRLLHHVAEKIDMIKATLNEIRVNKDKYDAFKETNNNQSAAEEAEEEKRAQSLQKLRRNVEEDVVGFIHDSKNIINLLLEGGSNRKAVSIVGMGGLGKTTLARKVYNCSQVKQHFMCRAWVYVSNECKVKDLLIGLFKHLMLNFEEQQRKGNERGKKNAGDVNDLSEEELKELVRKCLERKTYLVVVDDLWKKQDWDEVLDAFPDNNKGSRILITSRLKEVALHAGHDVPHYLQFLNEEESWELFRRKVFRGEDYPSDLELLGKQMVRSCRGLPLSIIVLAGLLANKEKSHREWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPMKLKPCFLYLGLFPEDFEIPVIPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVTRVNFNGGLKTCYVHDLLRDLCIAESKEDKMFEVCTNYNILIPTKPRRLSIYSDMGHYISSSNNDHSCIRSLFFFGPRYDVRRREWKWLLENFKLVRVLEFGPNRCQKIPSNLGNFIHLRYLRINSKHVTFVPDSILNLWNLQAIDLGIWKHDDPISFPIQMWKLKHLRHLNTQGPIKLRGRCSPSSYEKMWNLQTIPPLVLNAQATSLIEKGIFPNIKSMGLDVKDHGYEGKFPNLLQNLQQLMHLNKLVILLGSKPRELVQNLGQLSCLTILVIDNVLTLLASEVIFPPNIKELTLSWIKYITHEGINSLGNHSKLKFLRLLGNPLSEYSFDFNCVGGSFPQLEVLQMEYLKLRKWKLGNGAMQRLQNVIIHKCQSLDNLPTELCSLNRLRKVHITNSPSKQMTHILGILETNNGVQVVIGDSSPWYDDIYFKLFLAHKAAVDFMRHISQQS	938

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02730	938	PANTHER	DISEASE RESISTANCE PROTEIN RP	32	844	IPR044974	GO:0006952
	Vimu5g02730	938	FunFam	Probable disease resistance protein At1g61300	144	328	-	-
	Vimu5g02730	938	Coils	Coil	141	161	-	-
	Vimu5g02730	938	CDD	RX-CC_like	3	120	IPR038005	-
	Vimu5g02730	938	Gene3D	-	419	509	IPR036388	-
	Vimu5g02730	938	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	156	433	IPR027417	-
	Vimu5g02730	938	Gene3D	-	129	327	IPR027417	-
	Vimu5g02730	938	SUPERFAMILY	L domain-like	498	888	-	-
	Vimu5g02730	938	FunFam	Probable disease resistance protein At5g66910	333	420	-	-
	Vimu5g02730	938	Pfam	Rx N-terminal domain	5	84	IPR041118	-
	Vimu5g02730	938	Gene3D	-	333	418	IPR042197	-
	Vimu5g02730	938	Gene3D	-	5	106	-	-
	Vimu5g02730	938	FunFam	Probable disease resistance protein At1g63360	419	508	-	-
	Vimu5g02730	938	Pfam	NB-ARC domain	170	421	IPR002182	GO:0043531
	Vimu5g02730	938	PRINTS	Disease resistance protein signature	185	200	-	-
	Vimu5g02730	938	PRINTS	Disease resistance protein signature	847	863	-	-
	Vimu5g02730	938	PRINTS	Disease resistance protein signature	275	289	-	-
	Vimu5g02730	938	PRINTS	Disease resistance protein signature	368	382	-	-
	Vimu5g02730	938	Gene3D	Ribonuclease Inhibitor	522	912	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02730	Vimu-Chr5	37008026	37010842	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02730	184	757	WRKY Transcription Factor Family	AT5G45050	23.391	1.85e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02730	-		-	vra:106779091	1508.43