LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02728	ATGGCAGACAGTGTAGTTACCTTTGTTTTAGATCACTTAGCCAAGCTTGCCTCACGCGAAGCCAACTTGTTGTATGGCGTGGAGGACAGAGTCCAGTCCCTCCGCTACGAACTTCAAATGATCAAAGAGCTCCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTATTGGATCAAATCAGAGATGTGGCCCATTTGGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGAAGAACCATTCTCGGGAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCACCACGTAGCCCACAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACACAACAACAAGGACAAATATGATGCTTTCAAAGAAACCATTAATCAATCCGCAGCAGAAGAGAAGGAGGAGAACGAAAGGTTACAATCGCAGCTAAAGAAACTGAGAAGAAATGTGGAGGAGGAAGATGTGGTTGGCTTTGATCAGGATTCCAAGGATATCATCAAGCGACTCCTGGAAGGTGGTTCAAATCGTAAAGCAGTCTCTATCATTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAACAACAACCAGGTGAAACAACGCTTCATGTGTCGCGCGTGGGTTTATGTGTCGAACGAGTGCAGAGTTAAGGAGCTTTTGGTCAACCTTCTTAAGCATTTGATGCCAAATTTTAAAAAACAAAACAAAGGCAACAAAAAAGGTAAGAAAAGTGACGGAGACATTAACAGCCTGAGTGAGGAGGAGCTGAAGGAACTGGTGCGGAGCTGCTTGGAGAGGAAAAGATATCTTGTGATAGTAGATGATTTGTGGAAAAGGCAAGATTGGGACGAGGTGCAAGACGTTTTTCCGGATAACAACACAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAAGTGGCCTTGCATGCTGGTCATGATGTTCCTCACTATCTTCAATTCCTAAATGATGAAGAAAGTTGGGAGTTGTTTCGAAGGAAAGTGTTTAGGGGTGAAGACTATCCTTCTGATTTGGAGCCTTTGGGAAAACAGATAGTTCAAAGTTGTCGTGGTTTGCCACTTTCCATCATTGTCTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCACATAGAGAATGGTGTAAAGTGGTGGGTCATGTTAATTGGTATCTTACCCAAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGTTATGACAACTTGCCAAGGAGATTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAAGACTTTGAAATTCCTGTTACGCCATTATTACAGAAATGGGTTGCAGAGGGTTTTATACAACATACAGGAAATAGAGACCCATATGATGTTGCGGAAGACTACTTGTACGAGCTCATTGATCGCAGTTTGATTCAAATAGCAAGATTGAAGACTAATGCAGGTGTAAAGACATGTCAGGTTCATGATCTTCTTCGAGATCTTTGTATATCAGAGAGCAAAGAGGACAAAGTTTTTGAAGTTTGCACAGACAATAACATTCTAGTCCCGACAAAACCTCGCAGACTGTCCATTCACATTAAGATGGATCACTATATTTCTTCAAGCAACAATGACCATTCATGTATTCGTTCTCTGTTCTTCTTTGGCCCAGATTACCATGTTCATAGGAGGGAGCGAAAATGGCTTTTGAAAGACTTCAAACTCGTTCGAGTGTTAGAGCTCGCACCAACGAGTTGTAAAAAGATCCCTTCTAACATCGGGAACTTTATGCATTTAAAGTACTTGAGAATAGACTCACAATATATCACATTTGTTCCAGATTCAATACTTCACCTTTGGTCTCTACAAACCATAGACCTTGGTCCTTGGAGTCAGAATGTTTCAATTTCTTTTCCTGTCCAAGTGTGGAAACTCAAACATTTAAGACATTTGAGTACACGGGGGCCTATTAAGTTGCGAGGCAGTTGTTTAGGATCAAGTGAGAAGATGTACAATTTACAAACCATCTCTCCCCTTGTACTCAATAAACAAGCAACATATCTGATAGAGGAAGGAACATTCCCCAATATTAAGAGCATAGGGTTGAGCGTGGTTTTTGGGAAAGGTCAATTATCTAAATTGTTGCAGAACGTACAACTTTTAAGGTATTTGAATGAGTTCGTGATCGTCCTCCCAGATAGATATGACACAATCGTAACACTCCACGAGGGTGTGGAAAGGAAGAATGGTTGTAAGCCACAAGAACTATTTGAAAGTCTAGGGCAATTTAATTGTCTAACTGTCTTAGAGATTAATAACGTTATAGACCTTCTAACTTGTGCAATCACACTTCCTTCAAACGTTACAGAGTTAAAATTGAAAGGAATTCGCTGCATTAGTGACGAGGGGATGAAGTGTTTGGGAAATCACGCCAAACTCAAAATTTTGAGGCTTTTTGGAGTTATGTTTTTTTTGACTCTGAATTCCTATGACCTTACTTGTGTTGGAGGCAGCTTCCAACAACTAGAAGTATTTCAAATGGAAAGTTTGAAAATTGAAAAGTGGAATTTAGGCAATGGTGCAATGCCAAGACTTCAAAGTCTGGTGATCAACTTTTGTGGAAGGTTAGATGATCTCCCAAATGAACTCTGGTCTTTGAGTGACTTGAAAAAAGTACATGTAACGAATCCCTCGGAACAAATGATTCGCATCTTACAAAATTTGGAAATCAACAATGCAGTTCAACTCGTTATAGAAGATCTTCCACCTTGGATGGATGAGAGTGATTGGAAAGTTTTCGAGTATTTGATGCAAGGCTAA	2832	0.4096	MADSVVTFVLDHLAKLASREANLLYGVEDRVQSLRYELQMIKELLNTTKRKKGMEHTVLDQIRDVAHLAEDVIDTFVAKVSIYKRRTILGRMLRGFGQARLLHHVAHKIDKLKTTLNEIHNNKDKYDAFKETINQSAAEEKEENERLQSQLKKLRRNVEEEDVVGFDQDSKDIIKRLLEGGSNRKAVSIIGMGGLGKTTLARKVYNNNQVKQRFMCRAWVYVSNECRVKELLVNLLKHLMPNFKKQNKGNKKGKKSDGDINSLSEEELKELVRSCLERKRYLVIVDDLWKRQDWDEVQDVFPDNNTGSRILITSRLKEVALHAGHDVPHYLQFLNDEESWELFRRKVFRGEDYPSDLEPLGKQIVQSCRGLPLSIIVLAGLLANKEKSHREWCKVVGHVNWYLTQDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQHTGNRDPYDVAEDYLYELIDRSLIQIARLKTNAGVKTCQVHDLLRDLCISESKEDKVFEVCTDNNILVPTKPRRLSIHIKMDHYISSSNNDHSCIRSLFFFGPDYHVHRRERKWLLKDFKLVRVLELAPTSCKKIPSNIGNFMHLKYLRIDSQYITFVPDSILHLWSLQTIDLGPWSQNVSISFPVQVWKLKHLRHLSTRGPIKLRGSCLGSSEKMYNLQTISPLVLNKQATYLIEEGTFPNIKSIGLSVVFGKGQLSKLLQNVQLLRYLNEFVIVLPDRYDTIVTLHEGVERKNGCKPQELFESLGQFNCLTVLEINNVIDLLTCAITLPSNVTELKLKGIRCISDEGMKCLGNHAKLKILRLFGVMFFLTLNSYDLTCVGGSFQQLEVFQMESLKIEKWNLGNGAMPRLQSLVINFCGRLDDLPNELWSLSDLKKVHVTNPSEQMIRILQNLEINNAVQLVIEDLPPWMDESDWKVFEYLMQG	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02728	943	Pfam	Rx N-terminal domain	5	81	IPR041118	-
	Vimu5g02728	943	FunFam	Probable disease resistance protein At1g63360	419	508	-	-
	Vimu5g02728	943	Gene3D	-	333	418	IPR042197	-
	Vimu5g02728	943	PRINTS	Disease resistance protein signature	275	289	-	-
	Vimu5g02728	943	PRINTS	Disease resistance protein signature	186	201	-	-
	Vimu5g02728	943	PRINTS	Disease resistance protein signature	368	382	-	-
	Vimu5g02728	943	PRINTS	Disease resistance protein signature	864	880	-	-
	Vimu5g02728	943	SUPERFAMILY	L domain-like	497	906	-	-
	Vimu5g02728	943	Pfam	NB-ARC domain	169	421	IPR002182	GO:0043531
	Vimu5g02728	943	CDD	RX-CC_like	2	119	IPR038005	-
	Vimu5g02728	943	FunFam	Probable disease resistance protein At1g61300	145	328	-	-
	Vimu5g02728	943	Coils	Coil	130	164	-	-
	Vimu5g02728	943	Gene3D	-	5	97	-	-
	Vimu5g02728	943	Gene3D	-	147	327	IPR027417	-
	Vimu5g02728	943	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	149	433	IPR027417	-
	Vimu5g02728	943	FunFam	Probable disease resistance protein At5g66910	333	420	-	-
	Vimu5g02728	943	Gene3D	-	419	509	IPR036388	-
	Vimu5g02728	943	PANTHER	DISEASE RESISTANCE PROTEIN RP	32	859	IPR044974	GO:0006952
	Vimu5g02728	943	Gene3D	Ribonuclease Inhibitor	541	935	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02728	Vimu-Chr5	37001343	37004174	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02728	185	505	WRKY Transcription Factor Family	AT5G45050	23.988	4.27e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02728	-		-	vra:106779070	1279.23