Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02727 ATGGAAGAGATTGTAGTTTCCTTTGTTTTAGATCACTTAGCCCAGCTTGTCGCACGTGAAGTTAACTTACTGTATGGCGTGGAGGATGGAGTCGAGTCCCTCCGGAGAGAACTTGAAATGATCAAAGAGCTCCTCAATACCACAAGGAGAGAGAGGGGAATGGAACATATAGTACTGAACCAAATCAGAGATATGGCCTACTTAGCTGAGGATGTCGTCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTGGGGAAGACGCTCCATGGCTTTGGCCAAGCATGGTTGCTCCACCGCTTATCCGACAAAATTGACTATATCAAAAACACTCTCAAGGAGATACGCGACAACAAGGATACATATGATGCTTTCAGAGAAACCACTAATGAATCAGCAGCAGAAGAGGAGAGGGAAAGGCTGGAATGGCTGCGGACTCTAAGAAGAGACGTGGAGGTAAAAGATGTGGTTGGCTTTGTCCATGACTCTGAGGTTGTCGTCAACCGACTCATGGGAGATAGTTCAAAACTTAAAGTCGTCTCTATCGTTGGCATGGGGGGATTGGGAAAGACCACCCTTGCCCGAAAGGTCTTTAATAACATCCAGGTGAAGAACCACTTTGATTGTCTCGCGTGGGTTTATGTCTCAAACGAGTGCAGATTTAGAGAGCTTTTGCTTGGCCTTCTTCACCAGTTTATGCCAAATTTTGAACAAGAATGCAGAGACATCAACAGTCGGAATGAGGATGAGCTAAAAAATATGGTGAAGAACTGCTTGGAGGGGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAATATAGAGGATTGGGATAAGGTGAAAGATGCTTTTCCAGACAACAACAAAGGCAGCAGAATATTGATTACTAGTCGTTCGAAAGAGGTGGCCACGCATGCTGGTCTTGATGTTCCTCATTATCTTCCATTTCTCAATGAAGAAGAAAGTTGGGAGTTGTTTCATAAGAAAGTGTTTATCGATGGAGACTGCCCTTCTGATTTGGAGCCTCTGGGAAAGCAGATGGTTCAAAGATGCTGTGGTTTGCCGCTCTCCATCATTGTTTTGGCTGGGCTGCTAGCCAACAAGGAAAAGTCACATACAGTATGGTCTAAAGTGGTCGATCATGTTAATTCGTATATCAATCAAGATAAGACCCAAGTGAATGAGATAGTTCTTAAGCTGAGTTATGACAATTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGATTATTTCCTGAGGACTCTGAAATACTTGTTGAGCCATTATTGCAAAAATGGGTTGCAGAGGGTTTTATACAAGATACAGGAGATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTAGCAGGGGTGAAGTTAAATGGAAGTTTAGAGAAGTGTCAAATTCATGATCTTCTTCGAGATCTTTGCATATCGCAGAGCAAAAAGGACAAAGTGTTTGAAGTTTGCACAAACAATAACATTGTAGACTCTACCAAACCTCGCAAACTGTCCATTCAGAGTGCCACAAGTGACTACATTTCTTCAAGCAAAAGAGACCATTCATGTGTTCGTTCCCTGCTTCTCTTTGGGACACATGATGATGAGTGGAAATGGCTTGTGGACGAGTTCAAATTGGTTCGAGTATTACAGTTTGGATCTATCTATCTCCAAGCGATCCCTTCCATTCTAGGGAACTTCATCCACTTAAGGTACTTGAGAATAGAAAATGTTCTTGTTTACTTTGTTCCAGATTCAATACTTAACCTTTGGAATCTACAAACCATAGACCTGGGTATTTTCAGATATAGGCAAGCAGTTTCATTCCCTGCTCAAATGTGGAAACTTAAATATTTAAGACACTGGAATTCATCAGGGCCTATCGAGTTGCGAGGAAGATGTTTACAATCAGTTGAGAAGATGTGGAATCTTCGAACCATGTCTCCCCTTACACTCAATAAGCAAGCAATATCTCTAATAAGGAATGGAACATTCCCTAATATTAAGAGGATGGGGTTGAGCGGGAGTCATGATTGTGAAGATGAATTACCCAATTTATTGCAGTCCCTACAACAATCAGAACATTTGAATTCATTAGTGATTTTTCCCCAAGGTTTTTTTGATATCAATCCCCAAGAATTGGTTCAAAGGCTAGAACAATTCAGTCATTTAACTACCTTAAGGATTGATTGGGTTAAGGATCTTCTAACCTCTGAGCTCATATTTCCCCCAAACATTATAGAGTTAACTTTGTCAAGGATTGAACACATTAGTGATGAAGGGATGAATGGTCTGGGAAATCACTCCAAACTCAAGATTTTAAGACTTTTGGGAAATATAGATAGGTTTAATGATCCCATTGACCTCAATTGTGTCGGCTTTCCACAGTTGGAAGTGTTGAAAATGAAAGAGTTGAAGCTTCGAAATTGGAAATTGGGCAATGGTGCAATGAGGAAGCTTCAACATGTGATTATCAAATTTTGTGGACCATATATTAATCTCCCAACTGAACTCTGTTCTTTGAATGGATTGAAACAAGTGCATATAGAAAGCAATATCGTACAAGTGACTGAACAGGTGCATGACATCTTACGAATATTGGAAACAAATAATAGAGTTCAAGTCTTTAGAAGCTTTTATCCAGCTTTGGATGAAGAGAATGATTGGGAATCTCATCATTAG 2730 0.4084 MEEIVVSFVLDHLAQLVAREVNLLYGVEDGVESLRRELEMIKELLNTTRRERGMEHIVLNQIRDMAYLAEDVVDTFVAKVSIYKRRTILGKTLHGFGQAWLLHRLSDKIDYIKNTLKEIRDNKDTYDAFRETTNESAAEEERERLEWLRTLRRDVEVKDVVGFVHDSEVVVNRLMGDSSKLKVVSIVGMGGLGKTTLARKVFNNIQVKNHFDCLAWVYVSNECRFRELLLGLLHQFMPNFEQECRDINSRNEDELKNMVKNCLEGKRYLVVVDDLWNIEDWDKVKDAFPDNNKGSRILITSRSKEVATHAGLDVPHYLPFLNEEESWELFHKKVFIDGDCPSDLEPLGKQMVQRCCGLPLSIIVLAGLLANKEKSHTVWSKVVDHVNSYINQDKTQVNEIVLKLSYDNLPRRLKPCFLYLGLFPEDSEILVEPLLQKWVAEGFIQDTGDRDPDDVAEDYLYELIDRSLVQVAGVKLNGSLEKCQIHDLLRDLCISQSKKDKVFEVCTNNNIVDSTKPRKLSIQSATSDYISSSKRDHSCVRSLLLFGTHDDEWKWLVDEFKLVRVLQFGSIYLQAIPSILGNFIHLRYLRIENVLVYFVPDSILNLWNLQTIDLGIFRYRQAVSFPAQMWKLKYLRHWNSSGPIELRGRCLQSVEKMWNLRTMSPLTLNKQAISLIRNGTFPNIKRMGLSGSHDCEDELPNLLQSLQQSEHLNSLVIFPQGFFDINPQELVQRLEQFSHLTTLRIDWVKDLLTSELIFPPNIIELTLSRIEHISDEGMNGLGNHSKLKILRLLGNIDRFNDPIDLNCVGFPQLEVLKMKELKLRNWKLGNGAMRKLQHVIIKFCGPYINLPTELCSLNGLKQVHIESNIVQVTEQVHDILRILETNNRVQVFRSFYPALDEENDWESHH 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02727 909 Gene3D - 406 497 IPR036388 -
Vimu5g02727 909 PRINTS Disease resistance protein signature 262 276 - -
Vimu5g02727 909 PRINTS Disease resistance protein signature 183 198 - -
Vimu5g02727 909 PRINTS Disease resistance protein signature 355 369 - -
Vimu5g02727 909 PANTHER DISEASE RESISTANCE PROTEIN RP 31 836 IPR044974 GO:0006952
Vimu5g02727 909 FunFam Probable disease resistance protein At5g66910 320 407 - -
Vimu5g02727 909 Gene3D - 320 405 IPR042197 -
Vimu5g02727 909 FunFam Probable disease resistance protein At1g61300 144 315 - -
Vimu5g02727 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 420 IPR027417 -
Vimu5g02727 909 Gene3D - 153 313 IPR027417 -
Vimu5g02727 909 Pfam NB-ARC domain 168 408 IPR002182 GO:0043531
Vimu5g02727 909 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vimu5g02727 909 FunFam Probable disease resistance protein At1g63360 406 495 - -
Vimu5g02727 909 SUPERFAMILY L domain-like 485 884 - -
Vimu5g02727 909 Gene3D - 5 96 - -
Vimu5g02727 909 Coils Coil 31 51 - -
Vimu5g02727 909 CDD RX-CC_like 3 121 IPR038005 -
Vimu5g02727 909 Coils Coil 102 122 - -
Vimu5g02727 909 Gene3D Ribonuclease Inhibitor 500 891 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02727 Vimu-Chr5 36993306 36996035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02727 181 492 WRKY Transcription Factor Family AT5G45050 23.397 1.88e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02727 - - vra:106779070 1127.85