LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02725	ATGACGGAGAGTGTAGTTACCTTTGTTTTAGATCACTTAGCCAAGCTTGCGACACGCGAAACTAACTTGCTGTTTGGTGTGAAGGATAAAGTCGAGTCCCTCCGGAGCGAACTTGAAATGATCAAAGAGCTCCTCAATACCACAAAGAGAAAGGAGGGAACGGAACAAATAGCACTGGACCAAATCAGAGATGTGGCCTACTCAGTTGAGGATGTCATCGACACATTCGTAGCCCAAGTTGTCCTTTACAAGAGAAGAACCATTATGGGGAAGATGCTCCATGGCTTTGGCCAAGTAAAGTTGCTCTTCCACGTAGCCCACGAAATAGACAAGCTCAAAACGAGGCTCAACGAGATACTCGACAACAAGGAAAAATATCATGTTTCCAAAACCGCTAATGAATCCGCAGTAGAAGAGGAGGAGGAGAAGAAAAGGTTGCGATGGCTGCACAAGCTAAGAAGAAACGTGGAGGAAAAAGATGTAGTTGGCTTTGTCCAGGACTCTAAGGATGTCGTCAAGCGACTCCTAGGAGATAGTTCAAATCATAAAGTCATCTCTATCGTTGGCATGGGGGGATTGGGAAAGACCACCCTTGCCCGAAAGGTCTATAATAACAGTCAGGTAATGAACCACTTTGATTGTCTTGCATGGGTTTATGTCTCAAACGAGTGCAGAGTTAGGGAACTTTTGCTTGGCCTTCTTAAGCAGTTGATGCCAAATTTTGAACAACAATGCAGAGACATTAACAGCCTGAATGAGGAAGAGTTGAGTAATATGGTGCGAAACTGCTTGGAGGAGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAAAAGGCAGGATTGGGATGAGGTGAAAGATGCTTTTCCAGACAACAACAGAGGCAGTGGAATATTGATCACTAGTCGTTCGAAAGAGGTGGCCACGCATGCTGGTCATGATGTTCCTCACTATCTTCAATTTCTCAATGAAGAAGAAAGTTGGGAGTTGTTTCGCAAGAAAGTGTTTAGCGATGAAGACTGCCCTTCCGATTTGGAGTCTCTGGGAAAGCAGATGGTTAAAAGATGTTGTGGTTTGCCGCTCTCCATCATTGTTTTGGCTGGACTGCTGGCCAACAAGGAAAAGTCACATAGAGAATGGTCTAAAGTGGTCGATCATGTTAATTGGTATCTCATTCGAGATGAGACCCAAGTGAATGATATAGTTCTCAAGCTGAGCTATGACAATTTGCCAAAGAGATTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCCGAGGACTTTGAAATACCTGTTGCGTCATTATTGCAAAAATGGGTTGCAGAGGGTTTTATACAAGATACAGGAGATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTAGCAAGAGTTAAGTTAAATGGAGGTTTGGAAAAGTGTCAAGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAAAGGACAAAGTGTTTGAAGTTTGTAAAAAAAATAACAATGTAGACTCTACCAAACCTCGCAGATTGTCCATTCATAGTGCCATGCGTGACTACATTTCTTCAAGCAAAAATGATCATTCATGTATTCGTTCCCTGTTTTTTTTTGGGCTACATTATGATGCGTGGAAATGGCTTTTGGACAACTTCAAATTGCTTCGAGTGTTAGAGTTTGGACTTAACAGTCGCCATGAGATCCCTTCCAATCTAGGGAACTTCATCCACTTAAGGTACTTGAGAATAAAATGTGTTTACTTTATTCCAGATTCAATACTTAACCTTTGGAATCTACAAACCATAGACTTGGTTACTTCTAGGGATATGCTTCGAGTTTCTTTCCCTGTTAAAATGTGGAAACTCAAATATTTAAGACATTTGAATACATCAGAACCTATCGAGTTTCGAGGGACATGTTCACAATCAGTTGAGAAGATGTGGAATCTTCAAACAATCTCTCCCCTTATTCTCAATAAGCAAGCAATATCTCTAATAAAGAATGAAACATTCCCCAATATTAAGAGGATGGGGATGTATGTGAATTGTGAAGGTGAAGGTGAACTATCCAATATATTGCAGAACCTACAACAATTAGAGCATTTGAGTTCATTAGTGATTTTGCCTCGAACATTACTTGGTTGTAAGCCGCAAGAACTGGTTCAAAGGCTAGGACAATTTAGTCGTCTAACTATCTTAGTGATTGATAATGCTAAGAATCTTCTAACCTCTGAACTCATATTCCCCCCAAACATTATAGAGTTAACTTTGTCAAATATTCACAGCATTAGTAATGAGGGGATGAATGGTCTGGGAAATCACTCCAAACTCAAGATTTTAAGACTTTTGGGAAATATAATGGTGTCTATGGATCCCACTGACCTCAATTGTGTTGGCTTCCCACAGCTGGAAGTATTGGAAATGAAACTTTTGCGACTTCGAAAGTGGGCATTAGGCAATGGTACACTGCAGAGGCTTCAACATGTGATTATCGACCGTTGTCGACCATTAGATAATCTCCCAACTGAACTTTGTTGTTTGAATGGATTGAGAAAATTGCATTTAAACAATTATCCCTCAGAAGTGACTGGACAAATGGATGACATCTTACGAATATTGGAAACAAATAATAGAGTTAAAGTCTTTAGAGGACATTTTCCATCTTGGGATGAAGAGAATAATTGGATATCTTAA	2721	0.405	MTESVVTFVLDHLAKLATRETNLLFGVKDKVESLRSELEMIKELLNTTKRKEGTEQIALDQIRDVAYSVEDVIDTFVAQVVLYKRRTIMGKMLHGFGQVKLLFHVAHEIDKLKTRLNEILDNKEKYHVSKTANESAVEEEEEKKRLRWLHKLRRNVEEKDVVGFVQDSKDVVKRLLGDSSNHKVISIVGMGGLGKTTLARKVYNNSQVMNHFDCLAWVYVSNECRVRELLLGLLKQLMPNFEQQCRDINSLNEEELSNMVRNCLEEKRYLVVVDDLWKRQDWDEVKDAFPDNNRGSGILITSRSKEVATHAGHDVPHYLQFLNEEESWELFRKKVFSDEDCPSDLESLGKQMVKRCCGLPLSIIVLAGLLANKEKSHREWSKVVDHVNWYLIRDETQVNDIVLKLSYDNLPKRLKPCFLYLGLFPEDFEIPVASLLQKWVAEGFIQDTGDRDPDDVAEDYLYELIDRSLVQVARVKLNGGLEKCQVHDLLRDLCISESKKDKVFEVCKKNNNVDSTKPRRLSIHSAMRDYISSSKNDHSCIRSLFFFGLHYDAWKWLLDNFKLLRVLEFGLNSRHEIPSNLGNFIHLRYLRIKCVYFIPDSILNLWNLQTIDLVTSRDMLRVSFPVKMWKLKYLRHLNTSEPIEFRGTCSQSVEKMWNLQTISPLILNKQAISLIKNETFPNIKRMGMYVNCEGEGELSNILQNLQQLEHLSSLVILPRTLLGCKPQELVQRLGQFSRLTILVIDNAKNLLTSELIFPPNIIELTLSNIHSISNEGMNGLGNHSKLKILRLLGNIMVSMDPTDLNCVGFPQLEVLEMKLLRLRKWALGNGTLQRLQHVIIDRCRPLDNLPTELCCLNGLRKLHLNNYPSEVTGQMDDILRILETNNRVKVFRGHFPSWDEENNWIS	906

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02725	906	PRINTS	Disease resistance protein signature	263	277	-	-
	Vimu5g02725	906	PRINTS	Disease resistance protein signature	356	370	-	-
	Vimu5g02725	906	PRINTS	Disease resistance protein signature	184	199	-	-
	Vimu5g02725	906	PRINTS	Disease resistance protein signature	603	619	-	-
	Vimu5g02725	906	Gene3D	-	407	498	IPR036388	-
	Vimu5g02725	906	FunFam	Probable disease resistance protein At1g63360	407	496	-	-
	Vimu5g02725	906	SUPERFAMILY	L domain-like	485	871	-	-
	Vimu5g02725	906	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	421	IPR027417	-
	Vimu5g02725	906	Gene3D	-	321	406	IPR042197	-
	Vimu5g02725	906	Pfam	Rx N-terminal domain	5	80	IPR041118	-
	Vimu5g02725	906	CDD	RX-CC_like	3	119	IPR038005	-
	Vimu5g02725	906	Gene3D	-	150	315	IPR027417	-
	Vimu5g02725	906	FunFam	Probable disease resistance protein At5g66910	321	408	-	-
	Vimu5g02725	906	Gene3D	Ribonuclease Inhibitor	499	890	IPR032675	-
	Vimu5g02725	906	FunFam	Probable disease resistance protein At1g61300	143	316	-	-
	Vimu5g02725	906	Coils	Coil	31	51	-	-
	Vimu5g02725	906	PANTHER	DISEASE RESISTANCE PROTEIN RP	31	820	IPR044974	GO:0006952
	Vimu5g02725	906	Gene3D	-	5	96	-	-
	Vimu5g02725	906	Pfam	NB-ARC domain	169	409	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02725	Vimu-Chr5	36982850	36985570	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02725	183	493	WRKY Transcription Factor Family	AT5G45050	23.397	1.31e-07	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02725	-		-	vra:106779070	1202.58