Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02724 ATGGCAGAGAGTATAGTTTCCTTTGTTTTAGACCACTTAGCCCAGCTTGCGGCACGCGAAGCTAATTTGCTGTATGGCGTGGAGGATAGAGTCCAGTCCCTCCATTACGAACTTCAAATGATCAAAGACCTCCTCAATACTACAACGAGAAAGAAGGGAATGGAACATACTGTATTGAACCAAATCAGAGATGTGGCCCAGTTAGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTCGGGAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCACCACGTATCCCACAAAATAGACAATATCAAAACCACTCTCAACGAAATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCAATAATCAATCCGCAGAAGAGGAGGAGCAGAAAAGGACACAATCAGTGCACAAGCTAAGAAGAAATGTGGAGGAAGAAGATGTGGTTGGTTTTGTCCAGGACTCCAAAGATGTCATCAAGCGACTCCTGGAAGGTGGTTCAAATCGTAAAGTTATCTCTATAGTTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTACAATAACAGTCAAGTGAAGCAATACTTCAAGTCTCGCGCATGGGTTTATGTGTCCAACGAGTGCAGAGTTAAGGAGCTTTTGCTTGGTCTTCTTAAGCATTTGATGCTAAAATTTCAACAGAAACGCAGAGGCAACAAAAAAGGTATGAAAAGTGCTGGAGACATTAGCAGCCTGAATGAGGAAGAGCTGAAAAAACTGGTGCGGAATTGCTTGGAGTGGAAAAGGTATCTTGTGGTGGTAGATGACCTGTGGAAAAAGCAAGATTGGGATGAAGTGCTAGATGCTTTTCCAGACAACAACAGAGGCAGCAGAATATTGCTCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTCATGATGTCCCTCACTATCTTCAATTCCTGAATAAAGAAGAAAGTTGGGAGTTGTTTCAGAGGAAGGTGTTTAGGGGTGAAGACTACCCTTCTGATTTGGAGCCACTCGGACAACAAATTGTTCAAAGTTGTCAAGGTTTGCCGCTCTCCATCATTGTCTTAGCAGGGTTGCTAGCCAACAAGGAAAAGTCATATAGAGAATGGTCTAAAGTTGTAGGTCATGTTAATTGGTATTTGACTCGAGATGAGACCCAAGTGAAAGATATAGTTCTCAAGCTTAGCTACGACAACTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAAGACTTAGAAATACTTGTTATGCCATTATTACAAAAATGGGTAGCAGAGGGTTTTATACAAGATACAAGGAATAGAGACCCAGATGATGTTGCAGAAGATTACTTGTACGAGCTCATCGATCGTAGTTTGGTTCAAGTAGCAAGAGTGGAAATGAATGGAGGTTTGGAGACGTGTCGAGTTCATGACCTTCTTCGAGACCTTTGTATATCAAAAAGCAAAGAGGACAAAGTTTTTGAGGTTTGCACAGATAACAACATTCTAATCCCGACAAAACCTCGTAGATTGTCCATTCACAGTAAGATGACTCACTACATTTCTTCAAGCAATAATGACCATTCATGTATCCGTTCCCTGTTATTCTTTGGTCCAGATTACTGTGTTGATAGGAGAGAATGGAAATGGCTTTTGGAAGGCTTCAAATTGGTTCGGGTGTTAGAGCTCGAACCAAACAGGTGCGGAAAGATCCCTTCAAAGTTAGGAAAATTTATCCACTTAAGATACTTGAGAATAGACTCGGAGGAGGTTAAGTTTGTTCCAGCTTCAATACTTGATCTTTGGAATCTACAAACCATAGACTTAGGTCCTTGGAGCCATGACATTCCAATTTCTTTCCCTATGCAAATATGGAAACTCAAACATTTAAGGCATTTGAATTCACGACGACCTATCAAGCTGCGAGGCAGTAGTTCAGGATCAAATGAGAAGATGTGGAATCTTCAAACCATTTCTCCTCTTGAACTCAATAGGCAAACAACATTTCTGGTAAAGAATGAAACATTTCCCAATCTTAAGAGGATGGGATTGAAAGTAGATTCTGGATGGAAAGGTGAATTACCCAATTTGTTGGAGAGCCTACAACAATTAAGTCATCTGAATAAGTTAGAGATTCTCCTCCCAGATAGTTATGATACAAGTGTAGAGCGTTCAGTCCATGAGAGTGTGGAAAGGAACAATGGTTGCAAGCCACGAGAACTGTTACAAAACTTAGGACAATTCAATTGTCTAACTGTCTTAAAGATTGAGAATGCTTTGAACCTTCTAATATGTGCAGTCACATTTCCTCCAAACGTTACAGAGTTAAAGTTGTCAGGGATTAGCTGCATTAGTGACGAGGGGATAAGTGGTTTGGGAAATCATACCAAACTCAAAATTTTGAGACTTTTGGGAGATGTAACTTGGTCTGGAGATTCCTCTGTGTTCTATTGTGTCGAAGGTAGTTTCCCACAGTTGGAAATATTTCGAATGGGTGTTTTGGCAGTTACAAAGTGGAAATTAAACAATGGTGCAATGCAGAAACTTCAGAGTGTGATGATCCACAATTGTGAAATGTTAGATGATCTTCCGAATGAACTTTGGTCTTTGAGTGACTTAAGAAAAGTACAGGTAACTAAACCATCGGAACAAATGGTTCTCATGCTACGAAATTTGAAACTGAACAATGGGATTCAACTACTCATAGATGCCGAAGAATCTGTTTAG 2784 0.4113 MAESIVSFVLDHLAQLAAREANLLYGVEDRVQSLHYELQMIKDLLNTTTRKKGMEHTVLNQIRDVAQLAEDVIDTFVAKVSIYKRRTILGRMLRGFGQARLLHHVSHKIDNIKTTLNEIRDNKDKYDAFKETNNQSAEEEEQKRTQSVHKLRRNVEEEDVVGFVQDSKDVIKRLLEGGSNRKVISIVGMGGLGKTTLARKVYNNSQVKQYFKSRAWVYVSNECRVKELLLGLLKHLMLKFQQKRRGNKKGMKSAGDISSLNEEELKKLVRNCLEWKRYLVVVDDLWKKQDWDEVLDAFPDNNRGSRILLTSRLKEVALHAGHDVPHYLQFLNKEESWELFQRKVFRGEDYPSDLEPLGQQIVQSCQGLPLSIIVLAGLLANKEKSYREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDLEILVMPLLQKWVAEGFIQDTRNRDPDDVAEDYLYELIDRSLVQVARVEMNGGLETCRVHDLLRDLCISKSKEDKVFEVCTDNNILIPTKPRRLSIHSKMTHYISSSNNDHSCIRSLLFFGPDYCVDRREWKWLLEGFKLVRVLELEPNRCGKIPSKLGKFIHLRYLRIDSEEVKFVPASILDLWNLQTIDLGPWSHDIPISFPMQIWKLKHLRHLNSRRPIKLRGSSSGSNEKMWNLQTISPLELNRQTTFLVKNETFPNLKRMGLKVDSGWKGELPNLLESLQQLSHLNKLEILLPDSYDTSVERSVHESVERNNGCKPRELLQNLGQFNCLTVLKIENALNLLICAVTFPPNVTELKLSGISCISDEGISGLGNHTKLKILRLLGDVTWSGDSSVFYCVEGSFPQLEIFRMGVLAVTKWKLNNGAMQKLQSVMIHNCEMLDDLPNELWSLSDLRKVQVTKPSEQMVLMLRNLKLNNGIQLLIDAEESV 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02724 927 CDD RX-CC_like 2 121 IPR038005 -
Vimu5g02724 927 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vimu5g02724 927 FunFam Probable disease resistance protein At1g63360 416 505 - -
Vimu5g02724 927 Gene3D Ribonuclease Inhibitor 535 919 IPR032675 -
Vimu5g02724 927 FunFam Probable disease resistance protein At1g61300 142 325 - -
Vimu5g02724 927 PANTHER DISEASE RESISTANCE PROTEIN RP 36 850 IPR044974 GO:0006952
Vimu5g02724 927 Gene3D - 416 507 IPR036388 -
Vimu5g02724 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 430 IPR027417 -
Vimu5g02724 927 SUPERFAMILY L domain-like 494 896 - -
Vimu5g02724 927 PRINTS Disease resistance protein signature 272 286 - -
Vimu5g02724 927 PRINTS Disease resistance protein signature 365 379 - -
Vimu5g02724 927 PRINTS Disease resistance protein signature 183 198 - -
Vimu5g02724 927 PRINTS Disease resistance protein signature 863 879 - -
Vimu5g02724 927 Gene3D - 330 415 IPR042197 -
Vimu5g02724 927 FunFam Probable disease resistance protein At5g66910 330 417 - -
Vimu5g02724 927 Pfam NB-ARC domain 168 418 IPR002182 GO:0043531
Vimu5g02724 927 Gene3D - 140 324 IPR027417 -
Vimu5g02724 927 Gene3D - 5 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02724 Vimu-Chr5 36975073 36977856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02724 182 502 WRKY Transcription Factor Family AT5G45050 24.308 2.68e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02724 - - vra:106779070 1277.69