LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02723	ATGGAAGAGAGTGTAGTTACCTTTGTTTTAGATCATTTAGCCCAGCTTGTGGCACGTGAAGCTAACTTGCTGTATGGCGTGGAGGACAGGGTCCAGTCCCTCCAGAACGAACTTCAAATGATCAAAGAGCTCCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTACTGAACCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGATACATTCGTAGCCAACGTTGCCATTTACAAGAGAAGAACCATTCTGGGGAGGATGCTCCGTGGCTTTGGACAATTAAGGTTGCTCCACCACGTAGCCGACAAAATAGACACGATCAAAGCCACTCTCAACGAAATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCAATAATCAATCCGCAGCAGAAGAGGCGGAGGAGGAGAAAAGGACACAATCACTGCACAAGCTAAGAAGAAATGTGGAGGAAGAAGATGTAGTTGGCTTTATCCATGACTCCAAGGATGTCATCAACCTACTCCTGGAAGGTGGTTCAAATCGTAAAGCTGTCTCTATTGTTGGCATGGGAGGATTGGGAAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGCCAGGTGATGAGCCACTTCGATTGTCGTGCGTGGGTTTATGTCTCAAACGAGTGCAGAGTTAAGGATCTTTTGATTGGCCTTTTTAAGCATTTGATGCCAAATTTTGAACAGCAACGTAGAGGCAACAAAAGAGGAAAGAAAAACGTAGGAGACATTAACGACCTTAGTGAGGAGGAACTGAAGAAATTGGTGCGAAGCTGCTTGGAGTGGAAAAGGTATCTTGTGGTGGTAGATGACCTTTGGAAAAAGCAAGATTGGGACGAGGTGCTAGATGCTTTTCCAGACAACAACAGAAACAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTACATGCTGGCCATGATGTTCCTCACTATCTTCAATTCCTGAATGAAGAAGAAAGTTGGGAGTTGTTTCGCAGGAAAGTGTTTAGGGGTGAAGACTACCCTTCTGATTTGGAGCCTTTGGGGAAGCAGATGGTCCGAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTCTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCACATAGAGAATGGTCTAAAGTGGTGGGTCATGTGAATTGGTATCTCACTCAAGACGAAACCCAAGTGAAGGATATAGTTCTAAAACTCAGCTATGACAATTTGCCAAAAAGATTAAAACCGTGTTTTCTCTATCTTGGGTTATTTCCAGAAGACTTTGAAATACCTGTTACACCATTATTGCAAAAATGGGTTGCAGAGGGTTTTATACAAAATACAGGAAACAGAGACCCAGATGATGTTGCGGAAGACTACTTATATGAGCTCATTGATCGTAGTTTGGTCCAGGTAGTAAGAGTAGAGACTAATGCAGGTGTGGAGACATGTCAGATTCATGATCTTCTTCGAGATCTTTGCATATTAGAAAGCAAAGAGGACAAAGTTTTTGAAGTTTGCACAGACCATAATATTCTAATCTCAGCAAAACCACGCAGGCTGTCAATTCACGGTATGATGGATCACTACATTTCTTTAAGCAATAATGAACATTCATGTGTTCGTTCCTTGTTCTTCTTTGGCTCACATTACTATATTCGTGGGAGGGACTGGAAATGGATTTTTAAAAACTTGAAATTGGTTCGAGTATTGGAGTTTGGACTAAACGGGTCTAACAAGATGCCTTCCAATTTAGGGAATTTTATCCATTTAAAGTATCTGAGAATAAACATAGAGTATATTATGTTTGTTCCAGATTCAATACTTAAGCTTTGGAATTTACAAACCATAGACCTAAGTCCTCCAAGGGGTAACGTTCCAATTTCTTTCCCTGCCAAAATATGGAAACTAAGACATTTAAGGCATTTAAATACACCACGACCTATCAAGCTGCGAGGGAGTTGTTCAGGATCATATGAGAAGATGTGGAATGCTCAAACTGTCTCTTCCTTGGTACTCAATAGCCAAGCAAGGTCTCTGATAGAAAGAGGAACATTCCCTAATGTTAAGAGGTTAGGATTGAGAGTGACTTCAGAATGTGAAGCTGAATTACCCAAATTGTTGCAGAGCTTACAACAATTAAGTTATTTGAACAAGTTAGTAATTGTCCTCCGAGATAGAGATGATGAAGGTGTAAAGGACTTGACGGATGAGAGTGTGAAAAGGAACAATGGTTTCAGGCCGCAAGAAGTGTTACAAAGCTTAGGACAATTCAATTGTCTAACTATTTTAACCATTGAGAATGCTTTCGACCTTTTAACCTGTGAACTCACATTCCCTCCAACTGTTACAGAATTAACGTTGTCAGAGATTGACTGCATTAGTGATGAGGGGATAAATGGTTTGGGAAATCACACTAAACTAAAAAAATTGAGACTTTTGGGAGATGTATCCTTGTCGACGGGGGAATCCTTTGACTTGAATTGTGTCGGAGGCGGCTTCTCGCAATTGGAAGTGATTGAAATGGAAAATTTGAACCTTGAAAAGTGGAAACTAGACAATGGTGCAATGTCGAGGCTTCAGAGTGTGATGATTCACAATTGTGAAAGGTTAGATGATCTCCCAAATGAACTTTGGTCATTGAGTGGCTTGAGAAAAGTGCAGGTAATGAAACCTTCAAAAGAAATGGCTCGCATGCTAAGGAATTTGGAAATAAAGAATGAGGTTCAACTCGTCACAGAGGATTATCAACCTCGATTTCAATGTCGGTTGAATAGTATTGATTCGATGGATTTCAATACTTTTGAATACATTAGTGACATCTAA	2859	0.4103	MEESVVTFVLDHLAQLVAREANLLYGVEDRVQSLQNELQMIKELLNTTKRKKGMEHTVLNQIRDVAHLAEDVIDTFVANVAIYKRRTILGRMLRGFGQLRLLHHVADKIDTIKATLNEIRDNKDKYDAFKETNNQSAAEEAEEEKRTQSLHKLRRNVEEEDVVGFIHDSKDVINLLLEGGSNRKAVSIVGMGGLGKTTLARKVYNSSQVMSHFDCRAWVYVSNECRVKDLLIGLFKHLMPNFEQQRRGNKRGKKNVGDINDLSEEELKKLVRSCLEWKRYLVVVDDLWKKQDWDEVLDAFPDNNRNSRILITSRLKEVALHAGHDVPHYLQFLNEEESWELFRRKVFRGEDYPSDLEPLGKQMVRSCRGLPLSIIVLAGLLANKEKSHREWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPKRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQNTGNRDPDDVAEDYLYELIDRSLVQVVRVETNAGVETCQIHDLLRDLCILESKEDKVFEVCTDHNILISAKPRRLSIHGMMDHYISLSNNEHSCVRSLFFFGSHYYIRGRDWKWIFKNLKLVRVLEFGLNGSNKMPSNLGNFIHLKYLRINIEYIMFVPDSILKLWNLQTIDLSPPRGNVPISFPAKIWKLRHLRHLNTPRPIKLRGSCSGSYEKMWNAQTVSSLVLNSQARSLIERGTFPNVKRLGLRVTSECEAELPKLLQSLQQLSYLNKLVIVLRDRDDEGVKDLTDESVKRNNGFRPQEVLQSLGQFNCLTILTIENAFDLLTCELTFPPTVTELTLSEIDCISDEGINGLGNHTKLKKLRLLGDVSLSTGESFDLNCVGGGFSQLEVIEMENLNLEKWKLDNGAMSRLQSVMIHNCERLDDLPNELWSLSGLRKVQVMKPSKEMARMLRNLEIKNEVQLVTEDYQPRFQCRLNSIDSMDFNTFEYISDI	952

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02723	952	PRINTS	Disease resistance protein signature	185	200	-	-
	Vimu5g02723	952	PRINTS	Disease resistance protein signature	866	882	-	-
	Vimu5g02723	952	PRINTS	Disease resistance protein signature	367	381	-	-
	Vimu5g02723	952	PRINTS	Disease resistance protein signature	274	288	-	-
	Vimu5g02723	952	FunFam	Probable disease resistance protein At5g66910	332	419	-	-
	Vimu5g02723	952	Coils	Coil	24	51	-	-
	Vimu5g02723	952	Gene3D	-	141	326	IPR027417	-
	Vimu5g02723	952	FunFam	Probable disease resistance protein At1g61300	144	327	-	-
	Vimu5g02723	952	Gene3D	Ribonuclease Inhibitor	542	939	IPR032675	-
	Vimu5g02723	952	Gene3D	-	5	106	-	-
	Vimu5g02723	952	FunFam	Probable disease resistance protein At1g63360	418	507	-	-
	Vimu5g02723	952	SUPERFAMILY	L domain-like	497	901	-	-
	Vimu5g02723	952	PANTHER	DISEASE RESISTANCE PROTEIN RP	31	858	IPR044974	GO:0006952
	Vimu5g02723	952	Pfam	Rx N-terminal domain	5	80	IPR041118	-
	Vimu5g02723	952	CDD	RX-CC_like	3	121	IPR038005	-
	Vimu5g02723	952	Pfam	NB-ARC domain	171	420	IPR002182	GO:0043531
	Vimu5g02723	952	Gene3D	-	332	417	IPR042197	-
	Vimu5g02723	952	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	150	432	IPR027417	-
	Vimu5g02723	952	Gene3D	-	418	507	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02723	Vimu-Chr5	36969786	36972644	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02723	184	435	WRKY Transcription Factor Family	AT5G45050	26.667	5.63e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02723	-		-	vra:106779070	1277.69