Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02716 ATGGAGAGTTTTCTGAATGGTCTCTTTTACTGCACATTGTTTGATTGCTTGGAAGCCTCAGCTTCAAGAACATTAATAGGGAGAAGCCTATTGGAGAAGATGCTTCTTGGTGAAGAGATCATGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTAGAAACATGGATTCCAAGGCTTGAATTGGCTGGATTTGGAACTGCACCTGTTAGTTCCAATGGAATTTGGCTTGCTGAAAAGTTGTTGCAAAGCTATGTGCCTGGTTACCACATGCATCAGAAGAACCAGTTCTTGTTTATTTGTTGGGAGAAAATTCCTCTGTTTTCAATTTCTGCATGGAAGTTTTAG 363 0.405 MESFLNGLFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIMNIVACEGVERKERHEKLETWIPRLELAGFGTAPVSSNGIWLAEKLLQSYVPGYHMHQKNQFLFICWEKIPLFSISAWKF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02716 120 ProSiteProfiles GRAS family profile. 1 119 IPR005202 -
Vimu5g02716 120 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 114 IPR005202 -
Vimu5g02716 120 Pfam GRAS domain family 4 119 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02716 Vimu-Chr5 36926106 36926561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02716 1 119 GRAS Transcription Factor Family AT1G50420 49.587 3.06e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02716 GRAS 9.3e-32 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02716 - - vra:106778126 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02716 5 36926106 36926561 Vimu5g02716 5 36926106 36926561 ECH