Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02715 ATGCATCGTGGCAGATTCATCAAGAGAAAACATGAACATTTTGGTCTTATAACAAGGGCTAATAGAGTTGCCCCTCGTGGAACAGTTAATGTTGATGATTTCGGAGCCAAGGCAGATGGAAGAGATAATTCCGAGGCATTTGGAAAGGCATGGAGTGAAGCATGTTCAAGAGGGTCTATCCTTGTGGTACCTGGAAATAGGATCTATCGTCTTAAGCCAATCACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGCACAATCGAGGCATGGAATCAGATGACGGCATACCAAGATAGACAACATTGGATTATATTTGACAGTGTTTCAAATTTCAGAATTGGTGGTGGTGGCACATTCAATGGCAAAGGAAGAAAGTGGTGGCAAAACTCCTGCAAAGCAACCACTAACCTTCCATGCAACGACCAACCAAGACCAAAGGCTGTGACTTTCTTTCAATGCAAAAATTTGGAAGTGAGAAACCTGATGTTCAAAGATGCACAGCAAATGCACTTAGTCTTTGATGGATGCTTCAATGTTATTGCTTCGAATCTGGTGATCAGAGCACCAGGGGACAGCCCCAACACTGATGGAATTCATGTCGCAGAGACACAAAATATTGTGATAAGCAATAGTCATATTGGGACAGGTGATGATTGTATTTCGATAATAAGTGGGTCACAAAACGTTCGAGCAACAGATATCAGCTGCGGCCCTGGACATGGAATAAGCATTGGTAGCTTGGGAGCTGATAAATCAGAAGCTGAAGTGTCCAATGTGGTTGTGAACAGAGCAACTTTAACCGGAACCACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGCTCTGGTTATGCAAGAAACATCAAATTTTTGAACATAATGATGCAAAATGTGACAAATCCCATCATCATAGATCAATACTACTGTGACCAAACCAAGCCATGTCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTTTTATACCAAAACATAAGAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAGCAGTCCCATGCAGCCAAATCTACCTGCAGGATGTGATTTTAGAGCCACAAGGCAGAGGTGGCACCATTGCAACATGTGAAAATGTTAGATATGTGAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1191 0.4265 MHRGRFIKRKHEHFGLITRANRVAPRGTVNVDDFGAKADGRDNSEAFGKAWSEACSRGSILVVPGNRIYRLKPITFSGPCRPNTAFMLYGTIEAWNQMTAYQDRQHWIIFDSVSNFRIGGGGTFNGKGRKWWQNSCKATTNLPCNDQPRPKAVTFFQCKNLEVRNLMFKDAQQMHLVFDGCFNVIASNLVIRAPGDSPNTDGIHVAETQNIVISNSHIGTGDDCISIISGSQNVRATDISCGPGHGISIGSLGADKSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQTKPCQEQDSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCSQIYLQDVILEPQGRGGTIATCENVRYVNRGKFFPQCTP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02715 396 FunFam Polygalacturonase QRT2 16 395 - -
Vimu5g02715 396 PANTHER - 28 382 - -
Vimu5g02715 396 SUPERFAMILY Pectin lyase-like 15 395 IPR011050 -
Vimu5g02715 396 ProSitePatterns Polygalacturonase active site. 238 251 IPR000743 GO:0004650|GO:0005975
Vimu5g02715 396 Gene3D - 12 391 IPR012334 -
Vimu5g02715 396 SMART pbh1 290 311 IPR006626 -
Vimu5g02715 396 SMART pbh1 208 229 IPR006626 -
Vimu5g02715 396 SMART pbh1 181 207 IPR006626 -
Vimu5g02715 396 SMART pbh1 261 282 IPR006626 -
Vimu5g02715 396 Pfam Glycosyl hydrolases family 28 61 383 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02715 Vimu-Chr5 36920665 36923439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02715 3 395 Glycoside Hydrolase AT3G07970 56.171 4.13e-153 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02715 K01184 - gmx:732596 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02715 5 36920665 36923439 Vimu5g02715 5 36920665 36923439 ECH
Vimu5g02715 5 36920665 36923439 Vimu4g02092 4 23245285 23248517 PCT