LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02714	TGTCTCTGCCACCTTCAATCACAAATGGCTCCATCTTCTGCCATTGTCACTTCCCGTTTTCATGAATCCATCACTCGCCATGCACTTCGCTCCTATCTCTCTGAGTTCATCTCCACTTTCTTCTACGTCTTTCTTGTCGTTGGCTCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAATCCAACAAGTCTGGTTGTGGTTTCCATTGCAAGTGCTTTTGCTTTGTCTTGTGTTCTGTATAATGCATGGGAGATCTCAGGTGGACACGTCAACCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCACTCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGAGGCATTGTTGTTGGCATGCATGTTCCAACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGCTAGAGGGTCTTCTGACATTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGATCCTAGGCGTGTTTCACTGGGTTCCAATGGCATACTTGTAGTTGGCTTTGTGGCTGGTGCAGGAGTCTTAGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCTGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCCACCATAGCTGGTCTTCTTTATGACAATGTGCTGTTCCGTTCTCTGCCTCCAGCAGCAGGGCTTTCAGAAGGAATTGGGGTGTGA	789	0.4892	CLCHLQSQMAPSSAIVTSRFHESITRHALRSYLSEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVSIASAFALSCVLYNAWEISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRGIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTVYAARDPRRVSLGSNGILVVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSLPPAAGLSEGIGV	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02714	262	PRINTS	Major intrinsic protein family signature	225	245	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	PRINTS	Major intrinsic protein family signature	188	210	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	PRINTS	Major intrinsic protein family signature	74	98	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	PRINTS	Major intrinsic protein family signature	156	174	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	PRINTS	Major intrinsic protein family signature	30	49	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	PRINTS	Major intrinsic protein family signature	111	130	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	Pfam	Major intrinsic protein	26	242	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vimu5g02714	262	SUPERFAMILY	Aquaporin-like	20	251	IPR023271	-
	Vimu5g02714	262	ProSitePatterns	MIP family signature.	92	100	IPR022357	-
	Vimu5g02714	262	Gene3D	Glycerol uptake facilitator protein.	13	251	IPR023271	-
	Vimu5g02714	262	PANTHER	AQUAPORIN-8	19	247	IPR034294	-
	Vimu5g02714	262	FunFam	Probable aquaporin TIP5-1	14	254	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02714	Vimu-Chr5	36917716	36919655	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02714	8	246	Major Intrinsic Protein MIP	AT3G47440	63.598	2.77e-102	296

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02714	K09873		-	gmx:100801448	421.394

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g02714	5	36917716	36919655	Vimu5g02714	5	36917716	36919655	ECH