Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02689 ATGAACAACAGTGGTGGAGGGACTTTGATGGGTTTGAGCAATGGTTACTATGGGAGATCGCCATTCACAGTGTCTCAGTGGGAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGCTTGCGGGTCTTCCTGTGCCTCAGAATCTGGTGCTCCCCATTCAGAAGAGCTTCAATTCTATACCACATGCCTTCTTTCATCATCCCACATGTCAGTTTTCCAATACTGTTTCTTTTCTTTCTGGAGATTTTGAACCTATTAGCTATGTAAAATGTGTGCAAACACTTCCATTTTTGTCTTTTTTGTTGCCAAATGAATGTCCCTTGAGTCAGGGGTGTGTTTGGAATGTTGGTAATGAAAAGCTGTGCATGACAAACTTTGCAGTGAGTTACTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGGAGATGTAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCAATCCTCTTCAACTGTCACAACACTTGATGTCACTGGTGGCAGTGGCAGCAGTAGAACTGTAAACTTCCAAAACCTTCCTGCAAATGCTGTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCATACCAGTTATCATCTAGATTCCATTCCTTATGCCATCCCAAGTAAAGAATACAGAAGTGTCTACTTCTTTCTGTCTTCTGTTAAAAAGTCCAGAGCTGTTGGCTACCTTGCTTTGCTTCAGCTTCTGTATCTTCAAGGACTTAAATCTGAGGGTGGTGAACATATCTTCTTTTCTGAAGCTTCAGGAAGCAGCAAAGTTCTCCAAATGGAGTCACAACAGCTGGAAGACACATGGTCTTTGATGTCTAACAATGTTGCCTCTTTTTCTACGTCAAAATCAAGCAATGATTCCCTGTTGCATAGTGATTACCCTCAAAACTCGTTTTTATCTGGTGAATATGCATCAGAAGAGCACCTGAAGGAGGAGGGTCAGTCTCTTCGACCCTTTTTCAATGAATGGCCAAAAGGCAGGGATTCATGGTCTGGTCTGGAAGATGAGAGATCTAACCAAGCAGCTTTCTCCACAACTCAACTTTCAATATCCATTCCCATGTCTTCTGATATCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAGAATGAGATTCAATTTCGGTAA 1251 0.4404 MNNSGGGTLMGLSNGYYGRSPFTVSQWEELEHQALIFKYMLAGLPVPQNLVLPIQKSFNSIPHAFFHHPTCQFSNTVSFLSGDFEPISYVKCVQTLPFLSFLLPNECPLSQGCVWNVGNEKLCMTNFAVSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTTLDVTGGSGSSRTVNFQNLPANAVGNLQGTDSGTDHTSYHLDSIPYAIPSKEYRSVYFFLSSVKKSRAVGYLALLQLLYLQGLKSEGGEHIFFSEASGSSKVLQMESQQLEDTWSLMSNNVASFSTSKSSNDSLLHSDYPQNSFLSGEYASEEHLKEEGQSLRPFFNEWPKGRDSWSGLEDERSNQAAFSTTQLSISIPMSSDISATSSQSPHGENEIQFR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02689 416 ProSiteProfiles QLQ domain profile. 21 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu5g02689 416 Pfam QLQ 21 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu5g02689 416 MobiDBLite consensus disorder prediction 376 416 - -
Vimu5g02689 416 MobiDBLite consensus disorder prediction 172 204 - -
Vimu5g02689 416 Pfam WRC 141 183 IPR014977 -
Vimu5g02689 416 MobiDBLite consensus disorder prediction 181 204 - -
Vimu5g02689 416 MobiDBLite consensus disorder prediction 369 416 - -
Vimu5g02689 416 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
Vimu5g02689 416 PANTHER GROWTH-REGULATING FACTOR 5 20 398 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu5g02689 416 SMART QLQ_2 20 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02689 Vimu-Chr5 36761610 36764685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02689 8 183 GRF Transcription Factor Family AT3G13960 43.750 4.96e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu5g02689 WRC 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02689 - - gmx:100787567 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02689 5 36761610 36764685 Vimu5g02689 5 36761610 36764685 ECH