Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02686 ATGCGCCCACCTCACGCGCACCTTTCCCTCGTGTTCACGTACGGAGAAGAGATTTTGCATGGAAGAACTGCAGTATTGAGTAATCATGATGTTCAAGAGAATATGGTATCCCTCAAATCTGGAAACAAATTGGACAAATATTCTATGATTCAGAAAGCTGATATGAAACTCGAATCAGGGACTTGTAATGTTTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCTAATGGGGTCAAAGGCCAAAGAATTCTCTGATGAAAACTCTCGCTTAGGGGAGGGTAATCAGTATTGTGAGGATGATCGGTCTTCTCCCGGTAGCAGAGCCTGCGAAAGATTGAAGCATGCTGGCGATGACACCAATCACAAGCCTGGCATTTCTTCAACTCATGATTCTCGGTCTGAAAATGCTGAGAATGGACAAGCCTTATCTGAGAAGTATCAGGATTCCAAGTGTTTTGAAAGTCTTGATGATATCACTTCTAGTATCAGTAGGACCAGTAATGCTAATTTAGCAAGTGATAGGCAACAAATAAATACAGACAGAGTAAATGTATCTGGTAGTTCGACTTTAGTCAGTCACTTAGAGGCAGAAGGATCTGGACACGGGCCATCTGTTGACATGTCTGGTTTGTCAGAATGCTGTATGGAAAATGTAGATTCGTCATGTACCAAAGGGAGAGTACCTATTATTGCTGCTGATGCAAAACCTGTGGCAGATAAGGAAAACCTAAATAATAGTACAGCCAAAGTTTCAGTGGAAATATGTCCGAAGTCAGAAGCAGATATGGGAAATAATGTTGATGTTGCTAAAGATGAAGATCGTAAATATTCAGCCCATGATGGACTGCATGAGAAGATGGATGAGCTGATTAAATCATCTGGCAGGTCTGAACCTCAATCAGAAGATGAGGGTGATGAATCAGATGTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATGCTGGTCGTGAAGATCTACTTGCCATATGTTGTAGGTGTAGTGATGGTGCAGAGCACACCTACTGCATGAGGGAAATGCTTGTCAAGCTCCCGGAAGGTGATTGGTTGTGTGAAGAATGCAAGTGTGCAGAGGAGACAACAAATCGAAGACTCGTTGTTGAAGAAAAGAAAAAGCTTCATAAAGTTATTTCAGCTTCACAAATTTCTGGCAAAAGACCTTCTCAGAGCGTGGAAATAGCTACAGCAGCTAAAAGGCAAGCTCTTGAATTGAGCACAGGATCACCAAAGGCATCAAGCCCAAAGAGAATAGTCTCACTCTCACGAGAATCTTCTCTCAAGAGCATGGATAAAGGAAAGATGAAGTCTGGGCAACAGATCCCCATGCGTAACCACCTTGGTAGCGATAATGTAGACCTTGCACGGTCTCTTTCGACTGGCAGTCGGAGTCAAAATCCAAGGAGTACATTGATGAAGTCCAATTCATTCAACAACTTCAATTCCAAGCCTAGAATCAAACTTGTCAATGAAGTTGTTCCCCAAAAGCAGAAAGGGGGTGTCGAACATATTTCTAAGAATATTGAGACACCTGCGGGGATGATGAGCAAATCAGTGTCATTCAAATCCTCACACTTGGGGCGGTCAAATACTAATGATTCAAAAGTTAAATCAAGTTTTTCTAAACCTGGAATTGTTCAGGATTTGAAACCATTGAGACATACAAAAGAATCGGGTTCACTTGACAAGAAATTTCAACCTAATCGACCTGTCATTTGTTCAACTACGGTTAGTTCTGTTGTTTCCACATCAAAAGGTGATCATAAGCTTGCTCCTCATGGTGAAACTGCTAAACCTTATACAGTTAACAACAATCGAGAATTTAAGGTCAACCAAGATGGAAAAGTACATTCATTATCGAAGTCTATGAATAATACAGGCAGTAGAAGCCCAGAACCTCAAGTTAGTTCAGATAGAACATCAACCAGTGTTGATGAAACTCAACAGGATAGGATGCCTCGACCACAGGAGACTGTTAATCAGGTTGACAGAACCAAAGCTAGTTCTAATGATCATGTGAGGTCAGGTGTTACTAATGCTTCAAAGAGTTCATTCTGTCGTAAATGTAAAGATTTTGGCCATGCTACAGAATGTTGCTCGAGTAGTGGTAAGCAGGAATTTGGTCCTGAAGCATCAGTCATTACAAGTAGTTCAAAAAAGGATATGCATAAGGGAAATAGATTGAAAGCTGCAATCCAGGCAGCTTTGCGTAGAAGGCCTGAAATACACAAGAAGAAAGAAGGTCCTGATGAGACTAACGAGTTTCCTACATCAAGCAATGGTTTCAAACCTGAAGTCAATTCTCAAAGCCAAGTGTTGGTTTCTAACACAATGAAGAATAGTATATCTTCTGAAGAAACCAATGTGAAGCAGGAAATTCTTGAGAGTTCTTCATTTGAAACCTCTAAATATCCATCTGCTAATGATCCGAAGCAACTTAAATTTTGCCAAACTGATCCTTGCTCTCAGCTGAGAAAGTCAGATTTTGCTGGTCTCACTTCTGGAAAGCCTGTAGTGAGAGACTTGCCCAAAAATGACATGGCGATTTCAAGTGTTCTTTCAAAGATGTCGGTGATTCCGGAATATGAGTACATCTGGCAGTATGTAACATCTTGTGATGAGCTAGTTTGTCTTCTGTTCTGGATTGCTTTGTTTACTCTTCATGGTTTGCGATCAAATGTGTTTTATGAGTTTTGTTGTTCATGCAGGGGTGTCTTTGAAGTGCATAGAAATGGAAAGCCTCCAGACTTGTATGCTGGAATTCAGGCACATTTATCCGCATGTGCTTCTCCCAAAGTTATTGAGACAGTAAAGAATTTTTTACCTGAAGTTTCCCTAAATGAAGTTTCTCGATTGAGCATATGGCCTTCACAATTTCATCAAAGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGGCAAGAATATGAATATCACTTTTACGAGAGACACTACAAGGGTCTATTGGATCACATGGTTAGAAATGATTTGGCACTTAGGGGGACGTTTGATGGTGTTGAACTTCTCATATTTGCATCCAATCAGCTTCCGGAAGATTCACAACGTTGGAATATGTTATTTTTTCTATGGGGTATATTTAGAGGGAGGAGGATCAATCATTCAGATTCCACAAAAAGTGCATGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATTTTCCATCTGTCATCATGACTTTGTCTGAAACTTGGTGTTCACCAAAACGCATAGATGAAGAGTCCATTGATCAAGGTCACAATAAGCCGTGTAGGAATTTTGATAGTAAGGGAACTGTGTTTGGCCAGACACATTTGGAATTGCAAGTAAAGTTAGAGAGACAAGATTCTAGAGTCAACACCAAATCTACAGCAGGGATTCAGATCACCGGTACCCAATTGTTTCAAGAAATTAATTCCTCTGGTTCGTCCCTGGGAGATAGTGCACCAGATCATAGACGGTACATACAGTCTAAACCTCCCGAAGCAATGGGAACTAGTGTAAGTAGAAGGATTGTGGAAACAAAAACTAATCCTGATATTTCTGGTAAGCAAGAGACCTCTTTGTCTTCGGAGATTCCTTCTGTCGTTTGCCAAATAGATACTGCAAGTAATATCATTAAGGATAAAATTTTAGAGAGAACAAAATATGATGAGAATCAGCAAAGGCCTAAAAGGAAGCAGTTGGAGAATGATCTCAATATTAATGAGGAGGCAACGTTTCAGGGAGAGCTGGATTTGGAAGGGGCCAACTTTCAGGTACCTACTGATAAAAAAATTACGAATATAGATCTTTCAGAGACAGTTGTGGAGGCTTCTACAGTTAGTTGTCGGAAACGGCCTTTGAATGAGGTAAATGGCAAATTGGAAGACAGAGAAAGTAGCAAGAAGCTGCAAACAAGTTTGGGTGGAGCTTTTGGATGTAACGATTCTGCTGGAGCGAGGGTCTCTTTTAGTGGTAGTTTTCCATCACTTGTGAACAATCTTGGTTCCTGTTCTTCAGGGGGCAAAGAAGCTTGCGATGAGAAAATCATCCACGAGGACCTAGGAACGATGGAAAGAACCTTTTTTCCTGTGGATACTCGTAATAAACTTAACTTGGGGATGGTGGTGAACAGAGAGTCACCGAATGGGCCTCGTGAGTACGTGGAACAATTTGAAGTTGGGATTCCAAATTTGGAGCTTGCTTTGGGGGGTGAAACGAAACCGTCACACAAGGGTATGATGCCTTTCTTTGTTGGTGCAGTTGACAAGAAAATCAACCCCGAAAAGGCTCCAGATATCGAGCGAGACGATGACAACGTTGCTGCATCTCTTTCCTTGTCACTATCATTTCCATCATCAAGCAAAGAACACATCAAACCAGTTGCAAGAGATGAGCCTTTGCCCGATGCTAAATCACCGTTTCTTCTTTTTGGTAGATTCACGGACAAATAA 4491 0.4102 MRPPHAHLSLVFTYGEEILHGRTAVLSNHDVQENMVSLKSGNKLDKYSMIQKADMKLESGTCNVCSAPCSSCMHLNRALMGSKAKEFSDENSRLGEGNQYCEDDRSSPGSRACERLKHAGDDTNHKPGISSTHDSRSENAENGQALSEKYQDSKCFESLDDITSSISRTSNANLASDRQQINTDRVNVSGSSTLVSHLEAEGSGHGPSVDMSGLSECCMENVDSSCTKGRVPIIAADAKPVADKENLNNSTAKVSVEICPKSEADMGNNVDVAKDEDRKYSAHDGLHEKMDELIKSSGRSEPQSEDEGDESDVVEHDVKVCDICGDAGREDLLAICCRCSDGAEHTYCMREMLVKLPEGDWLCEECKCAEETTNRRLVVEEKKKLHKVISASQISGKRPSQSVEIATAAKRQALELSTGSPKASSPKRIVSLSRESSLKSMDKGKMKSGQQIPMRNHLGSDNVDLARSLSTGSRSQNPRSTLMKSNSFNNFNSKPRIKLVNEVVPQKQKGGVEHISKNIETPAGMMSKSVSFKSSHLGRSNTNDSKVKSSFSKPGIVQDLKPLRHTKESGSLDKKFQPNRPVICSTTVSSVVSTSKGDHKLAPHGETAKPYTVNNNREFKVNQDGKVHSLSKSMNNTGSRSPEPQVSSDRTSTSVDETQQDRMPRPQETVNQVDRTKASSNDHVRSGVTNASKSSFCRKCKDFGHATECCSSSGKQEFGPEASVITSSSKKDMHKGNRLKAAIQAALRRRPEIHKKKEGPDETNEFPTSSNGFKPEVNSQSQVLVSNTMKNSISSEETNVKQEILESSSFETSKYPSANDPKQLKFCQTDPCSQLRKSDFAGLTSGKPVVRDLPKNDMAISSVLSKMSVIPEYEYIWQYVTSCDELVCLLFWIALFTLHGLRSNVFYEFCCSCRGVFEVHRNGKPPDLYAGIQAHLSACASPKVIETVKNFLPEVSLNEVSRLSIWPSQFHQSGAKEDNIALYFFAKDIERQEYEYHFYERHYKGLLDHMVRNDLALRGTFDGVELLIFASNQLPEDSQRWNMLFFLWGIFRGRRINHSDSTKSACIPSLNVMPNEKDFPSVIMTLSETWCSPKRIDEESIDQGHNKPCRNFDSKGTVFGQTHLELQVKLERQDSRVNTKSTAGIQITGTQLFQEINSSGSSLGDSAPDHRRYIQSKPPEAMGTSVSRRIVETKTNPDISGKQETSLSSEIPSVVCQIDTASNIIKDKILERTKYDENQQRPKRKQLENDLNINEEATFQGELDLEGANFQVPTDKKITNIDLSETVVEASTVSCRKRPLNEVNGKLEDRESSKKLQTSLGGAFGCNDSAGARVSFSGSFPSLVNNLGSCSSGGKEACDEKIIHEDLGTMERTFFPVDTRNKLNLGMVVNRESPNGPREYVEQFEVGIPNLELALGGETKPSHKGMMPFFVGAVDKKINPEKAPDIERDDDNVAASLSLSLSFPSSSKEHIKPVARDEPLPDAKSPFLLFGRFTDK 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02686 1496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 380 IPR013083 -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 560 574 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 532 578 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 107 132 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 294 313 - -
Vimu5g02686 1496 SUPERFAMILY FYVE/PHD zinc finger 308 372 IPR011011 -
Vimu5g02686 1496 PANTHER - 318 1087 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 416 437 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 133 149 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 416 489 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 750 778 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 88 149 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 532 552 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 453 489 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 629 687 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 764 778 - -
Vimu5g02686 1496 MobiDBLite consensus disorder prediction 591 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02686 Vimu-Chr5 36739594 36748872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02686 317 405 C2H2 Transcription Factor Family AT3G01460 30.337 1.46e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02686 - - vun:114169861 2534.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02686 5 36739594 36748872 Vimu7g02299 7 19868901 19869698 ECH
Vimu5g02686 5 36739594 36748872 Vimu5g02686 5 36739594 36748872 ECH