LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02685	ATGTCAAGAAACTCGCAGGTTGTAACATGCAAAGCTGCAATATGCTGGGGGTTAGGGCAGCCTGTTACAGTGGAAGAGATACAAATTGATCCACCAAAAGCAACTGAAGTTCGAGTTAAGATGATTCGTTCCAGTTTATGCCACACAGACATAACAAGCATTCAAGGATTCCCACATATGAAATTTCCTCGAGCACTTGGGCACGAAGGAGTTGGTGTGGTGGAGAGTGTTGGTGACCAAGTGACAACCCTTAAAGAGGGCGATGTGGTGATCCCGACATACATAGGCGAGTGTGAAACATGTGAGAATTGTGTCTCCGGACAAACCAATCTATGTCTGACACACCCTGTGAGTTTAACTGGTTTACTACCAGATGATACTTCAAGGATGTCCATCAGAGGACAGAGGCTATACCATGTTCTGAGTTGTGCTACATGGTCAGAATACATGGTTAGTGATGTCAATTACGTTCTCAAAGTCGATCCAACCATCGATCCAACCTATGCCAGTTTCATCTCATGTGGGTTTTCAACTGGATTTGGAGCTGCTTGGAAAGAAGCCAAGGTTGAAAGAGGGTCCAGTGTAGCTGTTTTGGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGCGGAGCCAAATTTATGGGAGCAGATAAGATAATTGGAATTGACAAAAACGAGAAGAAGAGGGAAAAAGGAGAGGCTTTTGGAATGACCCACTTCATAAATCCTACTGATTCTGCTAAATCTGTTTCAGAATTGGTTAAGGAAGCAACTGGTGGAATGGGTGTGGATTATTCCCTTGAGTGCACCGGAATTCCTCCTTTGCTTACTGAATCATTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATAGTGGTTGGAATACCAGCAGAACCTACGGTTCCTTTGGGTATAATAACCATTCTTTTGGGCAGAACTTTGAAAGGTTCAGTTTTTGGGGGCCTAAAAGTTAGATCTGATCTGTCCATAATTGCTGACAAATGCCAGAAAAAGGAATTCCCTTTTGAAGAACTACTGAGCCATGAAGTCCCATTAGAAGATATTAAGAAAGCATTCGAGATATTGAAGGAGCCTAATTGTCTGAAAATTGTCATCAAGATATAA	1125	0.4267	MSRNSQVVTCKAAICWGLGQPVTVEEIQIDPPKATEVRVKMIRSSLCHTDITSIQGFPHMKFPRALGHEGVGVVESVGDQVTTLKEGDVVIPTYIGECETCENCVSGQTNLCLTHPVSLTGLLPDDTSRMSIRGQRLYHVLSCATWSEYMVSDVNYVLKVDPTIDPTYASFISCGFSTGFGAAWKEAKVERGSSVAVLGLGAVGLGAISGAKFMGADKIIGIDKNEKKREKGEAFGMTHFINPTDSAKSVSELVKEATGGMGVDYSLECTGIPPLLTESLEATKVGTGKTIVVGIPAEPTVPLGIITILLGRTLKGSVFGGLKVRSDLSIIADKCQKKEFPFEELLSHEVPLEDIKKAFEILKEPNCLKIVIKI	374

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu5g02685	374	FunFam	S-(hydroxymethyl)glutathione dehydrogenase	179	317	-	-
Vimu5g02685	374	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	164	336	IPR036291	-
Vimu5g02685	374	CDD	liver_alcohol_DH_like	8	373	-	-
Vimu5g02685	374	SUPERFAMILY	GroES-like	5	190	IPR011032	-
Vimu5g02685	374	Gene3D	-	14	369	-	-
Vimu5g02685	374	FunFam	alcohol dehydrogenase 1-like isoform X1	18	178	-	-
Vimu5g02685	374	Pfam	Zinc-binding dehydrogenase	202	321	IPR013149	-
Vimu5g02685	374	Pfam	Alcohol dehydrogenase GroES-like domain	35	159	IPR013154	-
Vimu5g02685	374	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	67	81	IPR002328	GO:0008270\|GO:0016491
Vimu5g02685	374	Gene3D	-	179	317	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02685	Vimu-Chr5	36734942	36737836	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu5g02685	35	323	Monolignol Biosynthesis Gene Families	AT2G21730	29.831	4.06e-19	85.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02685	K00121		-	gmx:100798341	580.482

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g02685	5	36734942	36737836	Vimu5g02685	5	36734942	36737836	ECH

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