Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02685 ATGTCAAGAAACTCGCAGGTTGTAACATGCAAAGCTGCAATATGCTGGGGGTTAGGGCAGCCTGTTACAGTGGAAGAGATACAAATTGATCCACCAAAAGCAACTGAAGTTCGAGTTAAGATGATTCGTTCCAGTTTATGCCACACAGACATAACAAGCATTCAAGGATTCCCACATATGAAATTTCCTCGAGCACTTGGGCACGAAGGAGTTGGTGTGGTGGAGAGTGTTGGTGACCAAGTGACAACCCTTAAAGAGGGCGATGTGGTGATCCCGACATACATAGGCGAGTGTGAAACATGTGAGAATTGTGTCTCCGGACAAACCAATCTATGTCTGACACACCCTGTGAGTTTAACTGGTTTACTACCAGATGATACTTCAAGGATGTCCATCAGAGGACAGAGGCTATACCATGTTCTGAGTTGTGCTACATGGTCAGAATACATGGTTAGTGATGTCAATTACGTTCTCAAAGTCGATCCAACCATCGATCCAACCTATGCCAGTTTCATCTCATGTGGGTTTTCAACTGGATTTGGAGCTGCTTGGAAAGAAGCCAAGGTTGAAAGAGGGTCCAGTGTAGCTGTTTTGGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGCGGAGCCAAATTTATGGGAGCAGATAAGATAATTGGAATTGACAAAAACGAGAAGAAGAGGGAAAAAGGAGAGGCTTTTGGAATGACCCACTTCATAAATCCTACTGATTCTGCTAAATCTGTTTCAGAATTGGTTAAGGAAGCAACTGGTGGAATGGGTGTGGATTATTCCCTTGAGTGCACCGGAATTCCTCCTTTGCTTACTGAATCATTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATAGTGGTTGGAATACCAGCAGAACCTACGGTTCCTTTGGGTATAATAACCATTCTTTTGGGCAGAACTTTGAAAGGTTCAGTTTTTGGGGGCCTAAAAGTTAGATCTGATCTGTCCATAATTGCTGACAAATGCCAGAAAAAGGAATTCCCTTTTGAAGAACTACTGAGCCATGAAGTCCCATTAGAAGATATTAAGAAAGCATTCGAGATATTGAAGGAGCCTAATTGTCTGAAAATTGTCATCAAGATATAA 1125 0.4267 MSRNSQVVTCKAAICWGLGQPVTVEEIQIDPPKATEVRVKMIRSSLCHTDITSIQGFPHMKFPRALGHEGVGVVESVGDQVTTLKEGDVVIPTYIGECETCENCVSGQTNLCLTHPVSLTGLLPDDTSRMSIRGQRLYHVLSCATWSEYMVSDVNYVLKVDPTIDPTYASFISCGFSTGFGAAWKEAKVERGSSVAVLGLGAVGLGAISGAKFMGADKIIGIDKNEKKREKGEAFGMTHFINPTDSAKSVSELVKEATGGMGVDYSLECTGIPPLLTESLEATKVGTGKTIVVGIPAEPTVPLGIITILLGRTLKGSVFGGLKVRSDLSIIADKCQKKEFPFEELLSHEVPLEDIKKAFEILKEPNCLKIVIKI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02685 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Vimu5g02685 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 336 IPR036291 -
Vimu5g02685 374 CDD liver_alcohol_DH_like 8 373 - -
Vimu5g02685 374 SUPERFAMILY GroES-like 5 190 IPR011032 -
Vimu5g02685 374 Gene3D - 14 369 - -
Vimu5g02685 374 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Vimu5g02685 374 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Vimu5g02685 374 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Vimu5g02685 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Vimu5g02685 374 Gene3D - 179 317 - -
Vimu5g02685 374 PANTHER ALCOHOL DEHYDROGENASE 6 366 - -
Vimu5g02685 374 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02685 Vimu-Chr5 36734942 36737836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02685 35 323 Monolignol Biosynthesis Gene Families AT2G21730 29.831 4.06e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02685 K00121 - gmx:100798341 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02685 5 36734942 36737836 Vimu5g02685 5 36734942 36737836 ECH