Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02684 ATGGCTGCTGCTGACGACACAAACCCTCCCAAGGATTATTACAAATTGCTGGAGGTTGATTATGATGCAACTGATGAAAATATCAAATTAAATTATCGAAGACTCGCATTGAAATGGCATCCTGACAAGCACGGAGGTGACAGTGCTGTTACTACAAAATTTCAAGAGATAAATGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTTTTGATTATGATTTAACGGGGATATGCGAAATTGAAAAATATAGTTTACAGGAATATCTTGCCAGATTTAAAGGCATGATTCTTACTTGCAATGGACTTGGATGGTGGGATTCACCAGCTATAACGTCCAGTGTAAACATAACATGGCCTGTTGTCACAAGGAACTTAAAAAAGAATTGA 390 0.3769 MAAADDTNPPKDYYKLLEVDYDATDENIKLNYRRLALKWHPDKHGGDSAVTTKFQEINEAYNVLSDPAKRFDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGWWDSPAITSSVNITWPVVTRNLKKN 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02684 129 Gene3D DnaJ domain 2 90 IPR036869 -
Vimu5g02684 129 CDD DnaJ 12 66 IPR001623 -
Vimu5g02684 129 FunFam Chaperone protein DNAj, putative 4 91 - -
Vimu5g02684 129 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Vimu5g02684 129 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vimu5g02684 129 PRINTS DnaJ domain signature 49 69 IPR001623 -
Vimu5g02684 129 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vimu5g02684 129 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 104 - -
Vimu5g02684 129 SMART dnaj_3 11 69 IPR001623 -
Vimu5g02684 129 SUPERFAMILY Chaperone J-domain 10 98 IPR036869 -
Vimu5g02684 129 Pfam DnaJ domain 12 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02684 Vimu-Chr5 36715596 36717721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02684 13 74 C2H2 Transcription Factor Family AT1G74250 41.791 2.26e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02684 - - gsj:114380558 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02684 5 36715596 36717721 Vimu5g02684 5 36715596 36717721 ECH