Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02680 ATGGTTAGTACTCATACCATTCAATCAATGCAAAAATATCAAACATCCAACCACCCCTTTATCGTCTTTTTTAATTTTTTCATGTTTTTTTTCTTGAATTATCTATCAATTTACAATTTTGCTTGTTTTTTTGCTTCTGGGGTGTGGGATCAGAGAGGTTTCAATGAAGAGCATGGTGTTGTGGGGGGGAAGGAGGAAGAAAACTTGTGGCCTTCCTGGCTGCGGCCACTTCTCAAGACGAGTTTTTTTGTTCAATGCAAAGTCCACGCAGATTCCCACAAGAATGAATGCAATATGTATTGCTTGGACTGTGTGAATGGAGCCCTTTGTTCTGCATGTCTTGCTTCCCACAAAGAACACAGAACAATCCAGATAAGGAGATCTTCATACCATGATGTGATAAGGGTATCTGAGATACAGAAATTTCTGGACATAACAGGCGTCCAAACTTACATTATTAACAGTGCCAAGATTGTGTTCTTGAATGAAAGGCCCCAACCAAGGCCTGGAAAAGGGGTCACCAATACCTGCCAAGTCTGTGACCGCAGCCTTCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAAAAGTTCCGGAAGAAGAAAATGTTAGGTGAGACAGAAGGGTCTGATGGTGAAGAATCAGTGAACGGCATAAGCAATGTAAATGCCAGAAGCAAAATCCATAGCTTCACACCTTCAACACCACCACCAACAGTGGCTAATTACAGAACTGCAAAGAGAAGGAAAGGAATTCCACATAGAGCTCCAATGGGTGGAGGGCTCATTATAGAATACAACGTTGTATAG 828 0.4179 MVSTHTIQSMQKYQTSNHPFIVFFNFFMFFFLNYLSIYNFACFFASGVWDQRGFNEEHGVVGGKEEENLWPSWLRPLLKTSFFVQCKVHADSHKNECNMYCLDCVNGALCSACLASHKEHRTIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCDRSLLDSFSFCSLGCKIVGTSKKFRKKKMLGETEGSDGEESVNGISNVNARSKIHSFTPSTPPPTVANYRTAKRRKGIPHRAPMGGGLIIEYNVV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02680 275 CDD Bbox2 86 125 - -
Vimu5g02680 275 Pfam PLATZ transcription factor 126 197 IPR006734 -
Vimu5g02680 275 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 65 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02680 Vimu-Chr5 36694970 36697607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu5g02680 PLATZ 5.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02680 - - gmx:100810757 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02680 5 36694970 36697607 Vimu7g02301 7 19875152 19876654 ECH
Vimu5g02680 5 36694970 36697607 Vimu5g02680 5 36694970 36697607 ECH