Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02672 GTGATGATGGGGAGAGCACCATGCAGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAATATATTGGTGGATTACATTCAGAAACATGGGCATGGAAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAAAGCTGTAGGCTAAGGTGGACAAACTATTTGAGACCTGATATCAAAAGAGGAAAGTTCTCTGAGGAAGAACAGCAACTCATCATCAATTTACATGCAGTTCTTGGCAATAAGTGGTCAGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGATTGGATCCGGTGACTCATCGTCCAAGATCAGATCATCTTAATCTTCTATCCAGTCTTCAACAGTTGCTGACTGCTACCAACATTTTCACAAACAGTTTGGACATTAATGCTCTAAGGCTGCAATCAGATGCCACAGAACTAGCCAAACTCCAATTGCTGCATAACATGCTTCAAGTCCTTGTGGCTAGTCCTGCTTCAAACTTGGACTTGATCAATCCTTTTGGATCATCACTGCCAGATGAAGTTTTGGGATTGGATCAGTCCAAGCTCCAAAACCTTTACAATAGTTCAACTGGTTTTCTTTCTCAGAATCAGTCAAACTTTTTTCAAAGCTTTGAAGCTCCTCCTCAGCAGCAAGCTCTACCAACTGGGTATAACCACATGAATAATGGAGGAAGAGACAGGAGTTGCATGAAATCTGAAAAGGTTGATGAAGAACTTGATGTCCCTTGTTCATTTTCAACAGCATTAGATTCTCTTCCAAAACTGGTTTCAGCCTCACCCGAATGTTCAACTGGCAAACATATGGAAAACATGGTAAACCCAAATGAATTTTCTGACCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAACTGATGCTTATTGGAAAGATCTCATAGAGTAA 1017 0.412 VMMGRAPCSDESGLKKGPWTPEEDNILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEQQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSSLQQLLTATNIFTNSLDINALRLQSDATELAKLQLLHNMLQVLVASPASNLDLINPFGSSLPDEVLGLDQSKLQNLYNSSTGFLSQNQSNFFQSFEAPPQQQALPTGYNHMNNGGRDRSCMKSEKVDEELDVPCSFSTALDSLPKLVSASPECSTGKHMENMVNPNEFSDPSSTSTTFEMWGDFMYEEVTDAYWKDLIE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02672 338 FunFam Transcription factor MYB39 71 132 - -
Vimu5g02672 338 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vimu5g02672 338 MobiDBLite consensus disorder prediction 1 20 - -
Vimu5g02672 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vimu5g02672 338 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vimu5g02672 338 FunFam MYB-related transcription factor 15 68 - -
Vimu5g02672 338 CDD SANT 71 114 IPR001005 -
Vimu5g02672 338 Gene3D - 71 118 - -
Vimu5g02672 338 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vimu5g02672 338 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vimu5g02672 338 CDD SANT 18 63 IPR001005 -
Vimu5g02672 338 SMART sant 68 116 IPR001005 -
Vimu5g02672 338 SMART sant 15 65 IPR001005 -
Vimu5g02672 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 268 - -
Vimu5g02672 338 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vimu5g02672 338 Gene3D - 13 69 - -
Vimu5g02672 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02672 Vimu-Chr5 36648569 36649731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02672 3 338 MYB Transcription Factor Family AT5G16770 50.847 6.13e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g02672 Myb_DNA-binding 7.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02672 K09422 - gmx:547488 521.161