Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02660 TTGCCTTTTCCTCTGTTTCAGCACACACAACATACAACACAAGAATCAAACACAATGTCAGTCACTCACATCTTCAGATCAAAGTTACCAGACATTCCTCTCCCTACCAACCTCATTCTCCACGAATACTGCTTCCTTAAACTTCCCGAAGTCGCCAACCGCACATGCCTCGTCTCCGCCGCCAGATCCTACACCTACGCCGACACTCACCGCGCCTCGCGGAAGGTGGCCGCCGGCATGTCGAAGCTGGGCATCCAGAAGGGCGACGTCGTCATGATTCTCCTCCCCAACTCCCCGGAGTTCGTGTTCACCTTCATGGCGCTCTCCATGCTCGGCGCCGTCGCCACAACCGCCAACCCCTCCTACACCGCCGCCGAACTATCCAAACAACTAGCCGTCTCCAACGCCAAGCTCGTCGTCACCCTCTCCGCCCACGTCCACAAGCTCAATCAGCAAGTGCAACACCACTTCTTCAAGGTGGTCACCGTCGACGACCCACCGGAGAATTTCTCGGCTTTCCCGGAGGGCGAAGAGAGCGAGGTTCCGGAGGTTGAGATATCAGTGGAGGACACGGTGGCGCTGCCGTTTTCGTCGGGGACGACGGGGCTAGCGAAGGGGGTGATTCTGACGCACAAGAGTTTGGTAACCAGCGTGGCGCAACAGATGGAGGGAGAGAACCCGCACATGTATCTGAAAGAAGAGGATGTTGTGCTGTGCGTGCTTCCTCTCTTTCACATATTCGCCATGCACATCGTGATGATGTGCGGCATGAGAGCGGGGTGTGCCATTTTGCTGATCGAGAAGTTTGAGATGAGGACGATGCTGGAGGCGATTGAGCGGCACAGGGTGACGGTGGCGATACTGGTGCCGCCCCTGGTTGTGGCACTTACGAAGAACAGCGCGGTGGAGGAGTACGATTTGAGTTCGATACGATTGGTGATGTCGGGGGCTGCGCCGCTGGGGCTACAGGCGGAGGAGGCTCTGCGGAACAGGTTGCCTGACGCCATTATAGGACAGGGCTATGGGATGACAGAGAGTGGACCGGTCTTGACCATGTCTTTGGGTTTTGCAAAGTTTCCATTTCCAACCAAGTCTGGTTCGTGCGGAACTGTGGTGAGAAATGCTGAAATGAAGATCATTGACCCTTTAACTTCCTTCTCTCTTCCCCGTAACCACCATGGCGAGATTTGCGTCCGTGGCTCTCAGATCATGAAAGGGTATCTGAATGACGAGAAGGCCACTGCAGAAACCATTGATGCAGATGGTTGGCTTCATACAGGTGACATTGGCTTCGTTGATGAAGATGATGAGGTTTTCGTCGTTGACAGGGCCAAAGAACTCATCAAATTCAAAGGCTTCCAGGTGCCGCCGGCAGAACTTGAAGACCTTCTCAGGAGCCACCCTTCCATTGCAGATGCAGCTGTTGTCCCGCAAAAAGACGATGCTGCTGGCGAAGTTCCAGTCGCTTTCGTTGTTGGCTTTGATCTTACAGAAGATGCTGTAAAGGATTTTGTAGCTAAACAGGTAGTGTTTTACAAGAAGATATACAAAGTGTATTTTGTTGATGCAATTCCAAAGTCTCAGACTGGAAAGATATTAAGAAAAGAACTGAAAGCAAAACTCCATTGTCTTCTTTAA 1638 0.5256 MPFPLFQHTQHTTQESNTMSVTHIFRSKLPDIPLPTNLILHEYCFLKLPEVANRTCLVSAARSYTYADTHRASRKVAAGMSKLGIQKGDVVMILLPNSPEFVFTFMALSMLGAVATTANPSYTAAELSKQLAVSNAKLVVTLSAHVHKLNQQVQHHFFKVVTVDDPPENFSAFPEGEESEVPEVEISVEDTVALPFSSGTTGLAKGVILTHKSLVTSVAQQMEGENPHMYLKEEDVVLCVLPLFHIFAMHIVMMCGMRAGCAILLIEKFEMRTMLEAIERHRVTVAILVPPLVVALTKNSAVEEYDLSSIRLVMSGAAPLGLQAEEALRNRLPDAIIGQGYGMTESGPVLTMSLGFAKFPFPTKSGSCGTVVRNAEMKIIDPLTSFSLPRNHHGEICVRGSQIMKGYLNDEKATAETIDADGWLHTGDIGFVDEDDEVFVVDRAKELIKFKGFQVPPAELEDLLRSHPSIADAAVVPQKDDAAGEVPVAFVVGFDLTEDAVKDFVAKQVVFYKKIYKVYFVDAIPKSQTGKILRKELKAKLHCLL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02660 545 Gene3D - 444 542 IPR045851 -
Vimu5g02660 545 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Vimu5g02660 545 SUPERFAMILY Acetyl-CoA synthetase-like 24 541 - -
Vimu5g02660 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 445 - -
Vimu5g02660 545 Gene3D - 15 443 IPR042099 -
Vimu5g02660 545 Pfam AMP-binding enzyme C-terminal domain 459 531 IPR025110 -
Vimu5g02660 545 CDD 4CL 34 537 - -
Vimu5g02660 545 FunFam 4-coumarate--CoA ligase 2 446 543 - -
Vimu5g02660 545 Pfam AMP-binding enzyme 53 450 IPR000873 -
Vimu5g02660 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02660 Vimu-Chr5 36603856 36606138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02660 9 509 Monolignol Biosynthesis Gene Families AT1G51680 58.221 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02660 K01904 - gmx:100790396 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02660 5 36603856 36606138 Vimu5g02660 5 36603856 36606138 ECH