Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02658 ATGGATGTAAGCTCTGTCAATATAGAGAAGGGAATGGATGCTCCCAAGGATCATCAAAATGTTGTAACTATAGATGTCCATGCTGCTAAAAATCTGCTAAATTCATCAGATTATCGTTATCTGGATGTGAGGTCGGTTGAGGAATTCAATAAAAGCCATGCTGAGAATGCTTATAATGTCCCCTACATGTTCATCACAGAAGCAGGTAAAATGAGTTTAAAGGGGCAGTATAAAAGTATCAAAATCTGGGGTGGACGGGTGAAAAATCCAGATTTTGTTGAGCAGGTGGCAGCAATATGCGAGAATGAGGATCATTTGATTGTGGCTTGCAACAGCGGAGGAAGATCACTCCGAGCCAGCGTTGACTTGCTTGATTCGGGATTTAAACATATTGTGAATATGGGAGGAGGCTACTCTGCATGGGTTGATGCTGGATTTGCTGGGGATAAGCCACCAGAAGAGCTCAAAACTAGTTGTAAGATTCGTCGTTAA 492 0.4207 MDVSSVNIEKGMDAPKDHQNVVTIDVHAAKNLLNSSDYRYLDVRSVEEFNKSHAENAYNVPYMFITEAGKMSLKGQYKSIKIWGGRVKNPDFVEQVAAICENEDHLIVACNSGGRSLRASVDLLDSGFKHIVNMGGGYSAWVDAGFAGDKPPEELKTSCKIRR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02658 163 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 18 146 IPR036873 -
Vimu5g02658 163 Gene3D - 9 147 IPR036873 -
Vimu5g02658 163 SMART rhod_4 24 147 IPR001763 -
Vimu5g02658 163 CDD RHOD 29 142 - -
Vimu5g02658 163 ProSiteProfiles Rhodanese domain profile. 34 150 IPR001763 -
Vimu5g02658 163 Pfam Rhodanese-like domain 28 143 IPR001763 -
Vimu5g02658 163 PANTHER THIOSULFATE SULFURTRANSFERASE 18 11 150 IPR044684 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02658 Vimu-Chr5 36597976 36599012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02658 8 154 Sulfurtransferasese or Rhodanese AT5G66170 38.255 4.41e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02658 K22547 - gmx:100794624 242.276