Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02657 ATGGGAGACGAAGACGACGACGAGGTGCTCGGTTGCGCCACCACCGCTTCTGGTCAATCCGCCTCCACCAACAGCTTGCCACCTCCTGCCGACAACACACTTCTCAAATTGAACCATCTCGACTTACACGCCGATGACGCTGGATCACAAGCCTCTCTTGCTGGCAAGAAGAAAAAGAGAGGCCAGCGCGCAGTTGGACCTGACAAGAGTGGAAGAGGTCTCCGACAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGAAGAACAACTTACAATGAGGTGGCAGATGAGCTTGTTGCTGAATTTTCTGATCCAACCAATAGTGAATTAACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTGTATGATGCTCTGAACGTTCTCATGGCGATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGACTTCCTCGTACTAGTGTGAATGATATTGAAGAAATAAAGACAGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTGTATTGTTATGTCAAGTTCGTAGGCCTTCAGAACCTTATTCAAAGAAATGAGCAGTTGTATAGCTCAGGAAATCCTCCCAGTGGGGGTGTATCTTTGCCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTAGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGTTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGCAAGATAACACGACGCACAATTTTACCGTTGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGCCAACCACAGGCTCCTTCTACAAATCTAAAAGTGTCAAATAGGCCTCCAACCTCACCTCCTCTCCCTGGCATATTAAAGGCAAGGGTTAAGCAAGAGCATTGA 984 0.4482 MGDEDDDEVLGCATTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPTNSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEEIKTERLGLRNRIEKKTAYLQELEEQLYCYVKFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQQDNTTHNFTVGGEGSSMSGLCQPQAPSTNLKVSNRPPTSPPLPGILKARVKQEH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02657 327 SMART E2F_TDP_2 69 152 IPR003316 GO:0005667|GO:0006355
Vimu5g02657 327 MobiDBLite consensus disorder prediction 275 327 - -
Vimu5g02657 327 FunFam Transcription factor-like protein DPB 64 157 - -
Vimu5g02657 327 SUPERFAMILY E2F-DP heterodimerization region 159 279 IPR037241 -
Vimu5g02657 327 Pfam E2F/DP family winged-helix DNA-binding domain 72 152 IPR003316 GO:0005667|GO:0006355
Vimu5g02657 327 MobiDBLite consensus disorder prediction 13 31 - -
Vimu5g02657 327 PIRSF Txn_factor_DP 8 327 IPR015648 GO:0005667|GO:0051726
Vimu5g02657 327 SMART DP_2 159 325 IPR014889 -
Vimu5g02657 327 Pfam Transcription factor DP 160 279 IPR014889 -
Vimu5g02657 327 Coils Coil 168 188 - -
Vimu5g02657 327 MobiDBLite consensus disorder prediction 1 33 - -
Vimu5g02657 327 Gene3D Transcription factor DP 158 283 IPR038168 -
Vimu5g02657 327 MobiDBLite consensus disorder prediction 275 308 - -
Vimu5g02657 327 MobiDBLite consensus disorder prediction 49 73 - -
Vimu5g02657 327 CDD DP_DD 157 266 IPR014889 -
Vimu5g02657 327 PANTHER TRANSCRIPTION FACTOR DP 18 280 IPR015648 GO:0005667|GO:0051726
Vimu5g02657 327 Gene3D - 65 157 IPR036388 -
Vimu5g02657 327 FunFam Transcription factor-like protein DPB 158 288 - -
Vimu5g02657 327 SUPERFAMILY "Winged helix" DNA-binding domain 72 153 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02657 Vimu-Chr5 36592678 36595333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02657 70 276 E2F-DP Transcription Factor Family AT5G02470 53.365 1.63e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu5g02657 DP 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02657 K04683 - gmx:100798342 567