Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02656 ATGGCTTACATGTGTGCAGACAGTGGAAACCTCATGGCCATTGCTCAGCAAGTCATCAAGCAGAAGCAGCAGCAAGAACAGCAGCAGCAGAAGCAGCACCAGCAGCACCACCAACATCATCATCATCATCACCATCACCACCATCACCAACACCATCTCAACCCTCTCTCTTTACATCCAATTCCATGGAACAACACTCCCACTCTCGGCTACCCTCTCCATCCCACCGACTTCCCCGACCCCTTCCAACCCGATCCCCCATTCCACTTCCCGGACACCCAATCCGCACCCGCACCGGCTCCCTTCCGCTTCTCCGATTTCGACTCCGACGACTGGATGGACTCCCTCATCGCCGCCGCCGACACCCCCACCTGGCACACCAATGCCGATTTCCCCTTCCCCTCCGATCTCAACCGCCTCATCTTCCCCTCCTCCGACACTACCGCCGCCGCTACATCGCTCCCGCTCCAACCAACACCTCCCCCGCTGCCTCAGGAACCCGTCAACGCCGGCCTCTCCTCCGAACCCGAGTCTGCTCACCCGCTCCTCAAAGCCCTAACAGAGTGCGCCTCCCTCGTGGAAAGCGAACCGGATCAGGCCGCGGAATCCCTCGCCCGGCTGAGAAAATCAGTATCCCAGCACGGAAATCCCACTCAGCGAGTGGGCTTTTACTTCTGCGAAGCCCTCTCCCGTAAAATATGGGCCGAGCAGGACAAGGGAGAGCCCAAAAGCGCGAAGACAACCGCCTCAGAGGAGTTGACGCTGTCTTACAAAGCCCTCAACGATGCCTGCCCTTACTCCAAGTTCGCACACTTAACCGCCAACCAAGCCATCTTGGAAGCCACCGAAGACGCCTCCAACATCCACATCCTGGACTTCGGCATCCCCAATAAGATCAAAATCTCTGGGATTCCCGCCATCGCTCTTGGGGCCTCGCCCGGCCCATCTCTCTCCGCCACCGGCAACCGCCTCTCCGAGTTCGCGAAGCTCCTCGACCTGAACTTCGAGTTCACGCCTATTCTCACTCCCATTCACGACCTCGACCGCAACAGCTTTTGCATTGACCCCGACGAGGCCCTGGCCGTGAACTTCATGCTCCAGTTGTACAACCTCCTTGACGAGCCTCCGACCGCCGTTGACACCGCCCTCCGGTTGGCGAAATCTCTCAACCCCAAAATCGTTACCCTCGGCGAGTACGAGGCAAGCTTGACACGTGTCGGCTTTGTGAACCGCTTCAAGACCGCGTTCAGGTACTTCTCCGCCGTTTTCGAGTCGCTGGACCCTAACTTGGCCGCGGACTCACCGGAGAGGTTTCAGGTGGAGAGCCTTCTCCTGGGGCGGCGAATCGACGCGGTGATTGGGCCGGGGCCGGTGAGGGAGAGTATGGAGGACAGGGAGCAGTGGAGGGTTCTGATGGAGCGTGCTGGGTTTGAGTCTGTGAGTTTGAGTCATTATGCAGTTAGTCAGGCGAAGATACTTCTATGGAATTACGGTTACAGCTCTCTGTTTTCGCTGCTTGAATCCACGCCGCCGGGCTTCTTAACTCTCGCCTGGAAAGATGTTCCTCTCTTGACTCTCTCCTCTTGGCGCTAA 1593 0.5819 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQKQHQQHHQHHHHHHHHHHHQHHLNPLSLHPIPWNNTPTLGYPLHPTDFPDPFQPDPPFHFPDTQSAPAPAPFRFSDFDSDDWMDSLIAAADTPTWHTNADFPFPSDLNRLIFPSSDTTAAATSLPLQPTPPPLPQEPVNAGLSSEPESAHPLLKALTECASLVESEPDQAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWAEQDKGEPKSAKTTASEELTLSYKALNDACPYSKFAHLTANQAILEATEDASNIHILDFGIPNKIKISGIPAIALGASPGPSLSATGNRLSEFAKLLDLNFEFTPILTPIHDLDRNSFCIDPDEALAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLDPNLAADSPERFQVESLLLGRRIDAVIGPGPVRESMEDREQWRVLMERAGFESVSLSHYAVSQAKILLWNYGYSSLFSLLESTPPGFLTLAWKDVPLLTLSSWR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02656 530 Coils Coil 12 35 - -
Vimu5g02656 530 MobiDBLite consensus disorder prediction 150 176 - -
Vimu5g02656 530 MobiDBLite consensus disorder prediction 72 100 - -
Vimu5g02656 530 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 164 524 IPR005202 -
Vimu5g02656 530 MobiDBLite consensus disorder prediction 77 94 - -
Vimu5g02656 530 MobiDBLite consensus disorder prediction 18 60 - -
Vimu5g02656 530 Pfam GRAS domain family 183 295 IPR005202 -
Vimu5g02656 530 Pfam GRAS domain family 296 530 IPR005202 -
Vimu5g02656 530 ProSiteProfiles GRAS family profile. 173 530 IPR005202 -
Vimu5g02656 530 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02656 Vimu-Chr5 36582465 36584117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02656 1 530 GRAS Transcription Factor Family AT5G66770 53.400 5.86e-180 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02656 GRAS 7.7e-57 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02656 - - gmx:100800989 674.47