Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02624 ATGGAGATAGAAGCAGCCATTGTTGCAGAGTGTGGAGAAGCCATGGAAGTTTCAGAAAAGAGAGGAATGTACCTTGTGTGGGAAGATTTAACTGTTGTGGTTCCAAATTTTGGAGATGGACACACTAAGAGATTGCTTAACGGGTTGAGTGGATATGCTGAACCTAACAAAATCATGGCTATAATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTCTTGCAGGAAGACTCTCCAGAAACGTTATCATGTCTGGAAATGTGTTTCTAAATGGAAAGAAGAGGAGATTGGACTATGGCGGAGCTGCTTACGTGACCCAAGAAGAGACAATGCTGGGAACTCTGACAGTGAGAGAGACGATATATTACTCAGCGAATCTAAGGCTTCCAGGGAGCATGAGAAGAGAAGAGGTGAATGAGATAATAGAAGGAACGATTATGGAAATGGGTCTTCAAGAATGTGCAGATCGGATAATAGGGAATTGGCATTTGAGAGGTATAAGCGGTGGAGAAAAGAGAAGACTGAGCATTGCTCTTGAAATCCTCACAAGGCCAACTCTCTTGTTCCTTGATGAACCCACCACTGGTCTTGACAGTGCCTCAGCATATTTTGTTGCTCAAACTCTCAGAAATTTAGCTCATGATGCAAAGACTGTTATCTCTTCTATACACCAACCAAGTAGTGAGGTTTTTGCACTCTTTGATCATCTCTTTCTTCTCTCTGGGGGTCAAACAATATACTTTGGACCTGCACAAAAGGCAACTCAGGAAGGAGTACCATTATCAACTGCAGAAACCAAAGCAATACTTGTAGAAAAATACCGATGGTCAGAGCACGCAACCATTGCAAGAGCAAGAATCAAGGAAATCTCAAACATTGGAGGGATTGATTTTGAAAGTAAAAGCAAATGCAAGGCAAAATGGTGGAAGCAACTGCTAGTGCTGACTCAGAGATCTTTCGTGAACATGTCCAGAGATGTGGGATACTACTGGATTAGGATAACCATCTATATTGCCTTATCTTTGTGTGTTGGAACAATCTTCTATGAAGTTGGATCGAGTTACGGAGCCATTTTTGCAAGAGGAGCATGTGGTGCTTTTATCTCAGGTTTCATGACATTCATGTCCATAGGGGGCTTCCCTTCTTTTATAGAAGAAATGAAGGTCTTCAATAAAGAAAGAATGAATGGATACTATGGGGTTGGAGTCTACATTCTCTCAAATTTTCTCTCTTCCTTACCCTTTGTGACGGTGATGTCCACTGCCACAGGGACAATAACCTATTACATGGTTAAGTTTCGGTCAGAATTTTCACATTTTGTGTATATCTGTCTGGATCTCATTGGGTGCATTGCGGTTGTGGAAAGCTCCATGATGATTATAGCTTCACTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCAGGATATATTGGTGTTATGATGATGACTGCTGGCTATTTCCGTCGGATCCCTGATCTTCCTAAGTTTTTCTGGCGTTATCCAATATCATACATCAATTATGGTGCATGGGGATTGCAGGGAGCTTACAAGAATGACATGATTGGGATGGAGTTTGAACCCTTAGAACCTGGAGCTCCAAAACTGAAAGGAGAATTCATCCTGAAAAGTGTGCTTGGAATTGAAATTGATAATTCAAAGTGGTGGGACTTAGGTGCAGTGATGATGATTCTGATAATGTTAAAGGTTCTTTTCTTTTTCATTCTGAAATTTAAGGAGACAGTTGGACCTTTGTTTTATAGCATCTACGCCAGGCAAACTCTTCACCGTATAAAGAAGAGAGCTTCATTCAGAAAAGGACCTTCTTTCCCTTCCAAAAGACACCAATCACTGCATCCTTTGTCTGCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 1908 0.4156 MEIEAAIVAECGEAMEVSEKRGMYLVWEDLTVVVPNFGDGHTKRLLNGLSGYAEPNKIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVFLNGKKRRLDYGGAAYVTQEETMLGTLTVRETIYYSANLRLPGSMRREEVNEIIEGTIMEMGLQECADRIIGNWHLRGISGGEKRRLSIALEILTRPTLLFLDEPTTGLDSASAYFVAQTLRNLAHDAKTVISSIHQPSSEVFALFDHLFLLSGGQTIYFGPAQKATQEGVPLSTAETKAILVEKYRWSEHATIARARIKEISNIGGIDFESKSKCKAKWWKQLLVLTQRSFVNMSRDVGYYWIRITIYIALSLCVGTIFYEVGSSYGAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFNKERMNGYYGVGVYILSNFLSSLPFVTVMSTATGTITYYMVKFRSEFSHFVYICLDLIGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRRIPDLPKFFWRYPISYINYGAWGLQGAYKNDMIGMEFEPLEPGAPKLKGEFILKSVLGIEIDNSKWWDLGAVMMILIMLKVLFFFILKFKETVGPLFYSIYARQTLHRIKKRASFRKGPSFPSKRHQSLHPLSAQEGLNSPIH 635
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02624 635 FunFam ABC transporter G family member 11 19 260 - -
Vimu5g02624 635 Pfam ABC-2 type transporter 313 522 IPR013525 GO:0016020|GO:0140359
Vimu5g02624 635 SMART AAA_5 55 245 IPR003593 GO:0016887
Vimu5g02624 635 CDD ABCG_EPDR 22 251 - -
Vimu5g02624 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 265 604 - -
Vimu5g02624 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 257 IPR027417 -
Vimu5g02624 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 269 IPR003439 GO:0005524
Vimu5g02624 635 Pfam ABC transporter 46 196 IPR003439 GO:0005524
Vimu5g02624 635 ProSitePatterns ABC transporters family signature. 169 183 IPR017871 GO:0005524|GO:0016887
Vimu5g02624 635 Gene3D - 13 293 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu5g02624 Vimu-Chr5 36367407 36373420 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02624 44 240 Calmodulin-binding Proteins AT2G36910 28.440 6.35e-11 63.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02624 K05681 - gmx:100788651 1047.34