Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02603 ATGGAGTTTGTGGGGAAGGCAGTTAAGAAAGAGGTGAAGGGGTTTGGGATTATTTCGGGAACAGTGAAATCGTACGATTCTGCGTCTGGTTTTTTGGAGATCGTTTACGAAGATGGTGATTCTGAGGAATTGGAGTCGTCTGACGTGGCTTCTCTCTTGCAATTTCAACCGGAGAGTGTCAAGGCTAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGATGCCGGGTCGAGAGGAAGCGCGATGTTGGAGCAGGTTCAGGTAATGTTAGAGAGAATTTGGTGGCGGAGGGTAGTGGTTTTAGGGGGGTTTTGGACGGGGATGTTTCTTCTGCTAGTGGTGGGGGTTTGGATTTAGATAGTGGTGTGTTAGAGAGAAAGTTGGATGGTATAGTTGGGAATGGAGGGAATCTTGAGGGCAATGCTAATGGGACTAAGGAGGAAAATGGGGTTAGAGAAACTCTGATAGAGGAAATTGGCTTAGAAGATAGTTTGAACAAGAGTATATCCGGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAGGCTTAATCTGGATGAGGATTTAAATTTGGATGTGAGTAATGAGGATCGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGACGTCAGCAGGGGAGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTATGTGAAGAAGGTAAGGAAACTCGGTGTGATGGTGACGGAAATGGACATTCTCTGGTGGATAATGTTTTGTTTGGTAAGACGGGACTGTCCCAAAAGGAAGAGATAAATGTTAATAATAGTTTTGTGGAAGATGACGGCATTAATGGTAATTTGAATCTCGCCTTTGATGCGGTTAAATTGGAGGTAATTCATGTTTATGCTGATCATCCATCTAAAGAAGGTTCTTTGTGTTTCGTTGAGGAAAATGGAGGAGACAGTCGCAAAGAAGACGCAGGGACTGTTAATTCTCATCAGATTTCAAGTGCAATTTCTGTTAGGGATTCAGATTTTGGGGAGGCTCAGCGAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATGAATACCAAGATGATCCAGGAAGTCCTTGCAAACAAGAAAAATTCCTAGATGTTTCAGGAAGTCCATGCAAACAAGAAAATAGCAGAAGGAAAAGAAGAAAATTATCAGATAATCCAGGAGCCATGCCAGAGACAGTTTTAAGGAGGAGCTCTCGTCGGGCATCAGCTAGAAAAGGGGTTTCAAGCACCTTAGAAGTGGAAGTGGCCGATGATCCTCTGATAACCTTGGCAACCGATGTCTTAACAGAAGAAAAACCTCTAATCCTTGTTTCTCAGAAATCTGAGCAATATAACAATGATCTGAGATACAGGCAATGCAACAATCTTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGGTGTTCCTGTTCTTGAACTGTTTTCTATTTATGCCTGTTTAAGATCATTCAGTACTTTGTTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTGGCTGCACTGAAGTCTGAAATTCCAAGTATATTATTTGACAGCATCCATGTTTCTATTTTGCAAACTCTGAGGAAGCAGTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGTCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCAGAGTACCTTCTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATATTAAACATCTAATGTTCAGAACTGATTACTATAGACAACCTGTAATGGTGAAGGTTGAGATTCTCCAGTACCTGTGTGATGATATGATCGAATCAGAAGCAATAAGGTCAGAGCTTAACAGAAGATCTTTGGTTACGGAGACTGATACGGGTTTTGATCAGAATATGTATTTTGACTCATCCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGACGGTTGCCCTGCTGCATTCCATTCACGATGTGTGGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCAGACCTATTAGGGATGGATATGGATGGCAGTGTCTATTTCAACAGCTGCAGTTACCTGCTAGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTACTACCACCGAAATGATATACACCTAGTAATTGAAGCTCTAAAATCTACGGGTCCTTTATATAGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAAAGCTAACTTGAATGTAGGGGATAGTGTCTTTAATCAAAGTTCCGGCAAGAACATGCAGATGAAGGGAGAATGTTCTACTATGTATACATCTTTGGCACCTTCTACTTCAGAGATATGTTTGGACAATAATCAGGCCAATGATCAAGGAAAGTTGGATGAAAATTCAACTGTTGACTGTTGTATGCGACTTGGCCAAGAGTTTCCAAAAGTTGGGAACTGCCTAGACTCAACGATCACCATAGAAAGTCCTTGCGTTGCTTCAGATGGATCAGCTGATACCACACAGACGAGAACAGGCACCAACAATGTTCAGACGTGTGGGCTCAATGATTTCAATAGATGTAATGAATCCTTGAATCAGCCAGGAGTACCAGAAAGACACTATCCGGACTGTTCTTTGACATCTTCCAGCTTGGATGTGGGGCATAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCCCAGACAGTAAGGATACTTCAGAAGGACCTTGTGGAATTGAATATGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCACAGGAGTTGATGTGTAAGTCGCCTGAGAAAATGAATAAGATTTTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAACCAAGGTCATTATGAAAAAATCTACTAACTTTTGTTGGCCAAGTATTCCCGAACTGGATGCAGCTGCTCAGAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGCCAATGAAGAGAGGGATTGTTTATTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTGTCCAATAGCACTTCGGTTGGGCTTCAACCCAGGAATATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGACTTTTATTGGGTCCGTGGCTTAATCTGCATCAAACAAATCTTTGGCATAAAGATCTTTTGAAGACATCTGATTTTCTTTGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGGTCCGCCATTCATATTGTGGTTTCACGCACATCTTCCAGGCATGGTATTGCAAAGAAAAGGGCCAGGTATTCAGATACTGAAACCAGTTCATCTTCAAACAGTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCATTCCTTGGTTGCCAAGGCTGCTAGACAAGGTGGGTGTAAGAAGATACCAGGAATTTTATATCTTGAGAATTCAGACTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAAAACAATCATCCTTTATGTGTATTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATATCTTATTGATTTTGGAAAGAGAAGGGCTATTCCGGATGTTGTTATTAAACATGGCTCTCTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAATCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAGGACAAAAGAATTGTTCGCAAATCCACTGATAAGAAACTTGGAAAAATGCTTGAGATTGGTAAAGTAAACAAGAAAATTCCTCAAGAAAGGGGATTTTCATATCTGTTTACTAGATTGGAAAGATCTGATTGTCATCAATGCGGGCACTGCAACAAAGATGTTTCAATGAGGTATTTGTAG 4329 0.4128 MEFVGKAVKKEVKGFGIISGTVKSYDSASGFLEIVYEDGDSEELESSDVASLLQFQPESVKAKPRVGRKPKKRCRVERKRDVGAGSGNVRENLVAEGSGFRGVLDGDVSSASGGGLDLDSGVLERKLDGIVGNGGNLEGNANGTKEENGVRETLIEEIGLEDSLNKSISGNVSCVKDGLDLNARLNLDEDLNLDVSNEDRLKRRDCIDLNLDVSNEDDVSRGEAMQRECNFDLNVEVVCEEGKETRCDGDGNGHSLVDNVLFGKTGLSQKEEINVNNSFVEDDGINGNLNLAFDAVKLEVIHVYADHPSKEGSLCFVEENGGDSRKEDAGTVNSHQISSAISVRDSDFGEAQRVDCPSEGGIAIIHEYQDDPGSPCKQEKFLDVSGSPCKQENSRRKRRKLSDNPGAMPETVLRRSSRRASARKGVSSTLEVEVADDPLITLATDVLTEEKPLILVSQKSEQYNNDLRYRQCNNLLPKLQLPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKQLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDIKHLMFRTDYYRQPVMVKVEILQYLCDDMIESEAIRSELNRRSLVTETDTGFDQNMYFDSSKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRAWMKSRRSLRGADLLGMDMDGSVYFNSCSYLLVSSSSEAGPLFYYYHRNDIHLVIEALKSTGPLYRGILMAIYKHWDIKANLNVGDSVFNQSSGKNMQMKGECSTMYTSLAPSTSEICLDNNQANDQGKLDENSTVDCCMRLGQEFPKVGNCLDSTITIESPCVASDGSADTTQTRTGTNNVQTCGLNDFNRCNESLNQPGVPERHYPDCSLTSSSLDVGHKINLRSVGASSTPSPDSKDTSEGPCGIEYVNYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEFISDQTKVIMKKSTNFCWPSIPELDAAAQKEKCGWCFTCKVANEERDCLFNSVVKPVWEVSNSTSVGLQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLCVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAIHIVVSRTSSRHGIAKKRARYSDTETSSSSNSASGLGMYWWRGGRLSRKLFNLKALPHSLVAKAARQGGCKKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQVRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEDKRIVRKSTDKKLGKMLEIGKVNKKIPQERGFSYLFTRLERSDCHQCGHCNKDVSMRYL 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02603 1442 ProSitePatterns Zinc finger PHD-type signature. 690 731 IPR019786 -
Vimu5g02603 1442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 751 IPR013083 -
Vimu5g02603 1442 SUPERFAMILY FYVE/PHD zinc finger 673 732 IPR011011 -
Vimu5g02603 1442 PANTHER PHD FINGER FAMILY PROTEIN 2 1441 - -
Vimu5g02603 1442 CDD PHD1_AIRE 689 731 - -
Vimu5g02603 1442 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 606 638 IPR028942 -
Vimu5g02603 1442 ProSiteProfiles Zinc finger PHD-type profile. 687 734 IPR019787 -
Vimu5g02603 1442 Pfam PHD-finger 690 731 IPR019787 -
Vimu5g02603 1442 SMART testlast3 492 552 IPR018501 -
Vimu5g02603 1442 ProSiteProfiles DDT domain profile. 492 552 IPR018501 -
Vimu5g02603 1442 SMART PHD_3 689 732 IPR001965 -
Vimu5g02603 1442 MobiDBLite consensus disorder prediction 390 404 - -
Vimu5g02603 1442 Pfam DDT domain 496 548 IPR018501 -
Vimu5g02603 1442 MobiDBLite consensus disorder prediction 380 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02603 Vimu-Chr5 36243196 36249381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02603 1 1439 PHD Transcription Factor Family AT5G12400 41.053 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu5g02603 DDT 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02603 - - vun:114169688 2649.39