Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02600 ATGATGTCACTTTCACCTAGTTTAAGTTCTCCCAACAATCTCTTGCTTAGAGAAATGAAATCCGAGGAAAGAGGTTTGTACTTGATCCATTTGCTGCTCACTTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAATGCCACACTCGAGCAAATTTCACTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATCGCGGCGTATTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAGTGACTATGCTGTCTGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATGTTCTCACAAATCAGGCCATCATTGAGGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCCCTCCTCCAAGTTTTGAGTGCTCGTCCTGAAGGCCCTCCTCATTTGAGAATCACTGGGATTCATCAGAAAAAGGAGATGCTGGATCAGGTAGCTCATAGACTAACTGAAGAGGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAACTTGAAAATCTTGATTTTGACAAACTTCGAGTGAAAACAGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGACGAAGCCTTGCGGAGAAAATCTCCTCGTCTGTTAAAAGTTTCAAACGGAATTCACATGCAAAGAGTCCTGTCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGGTCAATGGGTACACCCCTAGTCCTGACTCAACCTCGTCATCACCAGCATCTTTTACTACTTCCAATTCAATGAACATGGAGAGCTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGTTGTGACAGAGCAAGACTGTAACCACAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGACTGTTTGGAATCGACAGTCTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTTGGAGAAGAAATAAAAAACATCATTGCATGTGAAGGGCCTGATCGAAAGGAGAGACACGAAAAGCTTGAAAAGTGGTTCCAGAGATTTGACCAAGCTGGGTTCGGTAATGTGCCTCTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCGTCCAGAGCTATGGCTCTGAAGGATACAGAATGAGGGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1368 0.4335 MMSLSPSLSSPNNLLLREMKSEERGLYLIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIIEAMEGEKVIHIIDLNAAEAAQWIALLQVLSARPEGPPHLRITGIHQKKEMLDQVAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAFDDEALRRKSPRLLKVSNGIHMQRVLSLSQTTLGDMLEKDMVNGYTPSPDSTSSSPASFTTSNSMNMESFLNALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWRSRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02600 455 ProSiteProfiles GRAS family profile. 19 452 IPR005202 -
Vimu5g02600 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 451 IPR005202 -
Vimu5g02600 455 Pfam GRAS domain family 28 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02600 Vimu-Chr5 36216045 36219488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02600 2 455 GRAS Transcription Factor Family AT1G50420 65.659 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02600 GRAS 2.9e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02600 - - gmx:100814131 815.068