Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02595 ATGGAAGACATGAGCATGAGTGGGGAAATTGCACTTCCTGGCTTCCGATTCCACCCCACAGAGGAAGAGCTTCTGGATTTCTATCTTAAGAACATGGTTGTCGGCAAGAAACTCCGTTACGACGTTATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTACCTGATTTGGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAACATGGAAGCGGAGGAAGGCCAAACCGGACCACCGAGAAAGGGTTTTGGAAAGCAACCGGTTCAGACCGGAAAATAGTGACTCTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCTCCAAGTGGCCGCAAAACTGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAATTACCCAAGGAAATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTGGAGGAAAGGGCAGAGAGAGAGATGAAACAAATGGTGGGTTCCCCTGCTTCTCCTCCTTCATCGACGGACACTATGTCCTTCAGCAGCCCACAGGAAGAGGCAAACGTAGCCTTGCCTCTGCCATTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAATCTGAAGAAACAATGGGATGTGTAGTGCCTAAACAAGAGAAAACAAGCAGCAGCAGCAACAACAACAAAGGTAGTTGTGGGGCATCTTCCCTACAAATGCCCTTTGGGAAGGACAATCTTCCAGACCTGCAGCTTCCCATGTTAACAGATTGGACCCAAGATACCTTCTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTAACCCCTTCCAACATCTTGAACTTTTACTGA 882 0.4694 MEDMSMSGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPDLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEANVALPLPLLQHVLKKESESEETMGCVVPKQEKTSSSSNNNKGSCGASSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNLTPSNILNFY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02595 293 MobiDBLite consensus disorder prediction 178 192 - -
Vimu5g02595 293 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Vimu5g02595 293 MobiDBLite consensus disorder prediction 226 245 - -
Vimu5g02595 293 MobiDBLite consensus disorder prediction 221 249 - -
Vimu5g02595 293 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Vimu5g02595 293 MobiDBLite consensus disorder prediction 173 192 - -
Vimu5g02595 293 FunFam NAC domain-containing protein 67-like 20 161 - -
Vimu5g02595 293 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Vimu5g02595 293 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Vimu5g02595 293 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02595 Vimu-Chr5 36150249 36151460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02595 6 293 NAC Transcription Factor Family AT2G17040 60.345 2.25e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g02595 NAM 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02595 - - gmx:732555 507.679