Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02594 ATGGCTTTCCTTCTTCTCTTTCTCCTCTCGCTTCTCGCTTCTTCTGCCACTGCCTGCGATCGCTGCCTGCATCTGTCCAAGGCTTCCTATTTCACCAAAGCTTCTGTTCTTTCATCTGGGGCATGTGGGTACGGGTCTCAGGCACTGGACTTAAGTGGTGGAAACCTTGCAGCTGGTGTGGCCTCTCTCTTCAAAGACGGAGCCGGTTGTGGTGGCTGCTTTCAGATAAGATGCAAGAACCCTAGTGTTTGCAGCAAACTGGGTACTACAGTGGTGCTGACTGATCTTAATCACAACAATCAAACTGACTTTGTGCTCAGCAGCAGAGCTTTCTCAGGCATGGCTCAGAAGGACAAGGGCAAAGAAATATTGAAACTTGGCATTGTTGACATTGAATACAAGAGCGGTTTTGCCCTGTCCCCACTCCCCACCTACCGGCCCACCCACCACCTATACAGAACAACCATGGTGGACCAACCTTTTAATATTGTGAATCCCTACCTCAATCATGTGCCACCAGTACCTTGTGTTTACAAAAATCAGAATTTGGCGGTCCGTGTGGAAGAATCAAGCAAGAAGCCAGATTATTTAGCAGTGAAATTTCTGTACCAAGGAGGTCAAACAGAGATTGTAGGCGTTGATGTGGCTCAGGTGGGGTCTGCGAATTGGAGCTTCATGAGCAGAAACCACGGTGCAGTGTGGGACACAAGTAGGGTACCAAAAGGTGCATTGCAGTTTCGTTTTGTGGTAACGGCAGGGTATGATGGGAAGTGGATTTGGGCAAAGAAGGTTCTACCTGTTGATTGGAAAACTGGTGTGATATATGATTCTGGGGTTCAGATTACAGACATTGCACAAGAGGGTTGCTTCCCTTGTGATGATTCCACCTGGTCATGA 897 0.4805 MAFLLLFLLSLLASSATACDRCLHLSKASYFTKASVLSSGACGYGSQALDLSGGNLAAGVASLFKDGAGCGGCFQIRCKNPSVCSKLGTTVVLTDLNHNNQTDFVLSSRAFSGMAQKDKGKEILKLGIVDIEYKSGFALSPLPTYRPTHHLYRTTMVDQPFNIVNPYLNHVPPVPCVYKNQNLAVRVEESSKKPDYLAVKFLYQGGQTEIVGVDVAQVGSANWSFMSRNHGAVWDTSRVPKGALQFRFVVTAGYDGKWIWAKKVLPVDWKTGVIYDSGVQITDIAQEGCFPCDDSTWS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02594 298 Gene3D - 177 282 IPR036749 -
Vimu5g02594 298 PANTHER EXPANSIN-B3 9 280 - -
Vimu5g02594 298 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Vimu5g02594 298 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Vimu5g02594 298 CDD DPBB_EXLA_N 17 134 - -
Vimu5g02594 298 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 134 IPR007112 -
Vimu5g02594 298 FunFam Expansin-like A2 178 282 - -
Vimu5g02594 298 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 277 IPR007117 -
Vimu5g02594 298 Pfam Expansin C-terminal domain 184 266 IPR007117 -
Vimu5g02594 298 Pfam Lytic transglycolase 57 133 IPR009009 -
Vimu5g02594 298 SUPERFAMILY Barwin-like endoglucanases 9 134 IPR036908 -
Vimu5g02594 298 SUPERFAMILY PHL pollen allergen 182 277 IPR036749 -
Vimu5g02594 298 Gene3D - 11 135 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02594 Vimu-Chr5 36134595 36136059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02594 16 298 Expansin Gene Family AT4G38400 56.491 8.68e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02594 - - gmx:100819849 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02594 5 36134595 36136059 Vimu5g02594 5 36134595 36136059 ECH