Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02592 ATGATTAGTTCAAAGAAGATGATCCAAATGGCATGGAAGTGGCAGAAAGAGGTTACAAAGTACCAAAGGAAGAGACTTGTCTGGCCAAAGATTCAAGAAAATGCAGCAACAGCAGAAGGTTGCAGCGTGTGGACGAAGGCTGAAAAGGGTCACTTTGTCGTATACATACTGTATTTGAAAAACAACATTTTCAGAGAGCTTTTCAAGTTGGCAGAAGAAGAGTTTGGTCTTTCTAGCAACGTGCCTTTAACGTTGCCTTGCGAAGCCACGTTAATGGAGTACGTGATAACGTTGATAGAGAGAAACGTAACTAAGGATCTGGAAGAAGCTGTCTTGATGTTTATAGCTACCGTTCGATGCCATTCGTCCTATGATCTTCTTCGTGAACCAACCAACCAACGTTTGCTTTGCAGCTTCTGA 420 0.4238 MISSKKMIQMAWKWQKEVTKYQRKRLVWPKIQENAATAEGCSVWTKAEKGHFVVYILYLKNNIFRELFKLAEEEFGLSSNVPLTLPCEATLMEYVITLIERNVTKDLEEAVLMFIATVRCHSSYDLLREPTNQRLLCSF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02592 139 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 125 IPR003676 GO:0009733
Vimu5g02592 139 Pfam Auxin responsive protein 5 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02592 Vimu-Chr5 36124425 36124874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02592 42 107 Calmodulin-binding Proteins AT5G20810 36.364 2.41e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02592 - - gmx:100803097 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02592 5 36124425 36124874 Vimu5g02592 5 36124425 36124874 ECH