Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02585 ATGCCCCATTTCACTCCGCCACTGTCACTACAACTGCCACATGTTCATCTTCAACCCTCCCAAACACACCATAGCAAAAACCATTACACCAGATTATTAATGGAAGCTATTTTCGTCCCCAAACCAGCTTCTCATTCTCACTTCAAAACTAAATTCTCTTCAAACCCCAAACACTTCCTTAAACAACAACCATTTCTCCCCATCCGCCAAAACCCCACGTGCTTCCGCCTCGTCACCGCCGTACTCCAAAACCAACAACAAGCAGCTTCCAAAGACACCGAAGACGAGTCCTATGGTGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACGCCGCCGCCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGAGCCGTCTTGGGTTCCGGCAGACTTCATAGCCAAAGACGTCGTCGCCGAGTACGAAACCCCGTGGTGGACCGCCGCGAAGAAAGCCGATGAGCCCGCGCTGAGGAACATCCTCGAATCCGGCGACGGCCGTGATGTCGACGCTGTGGACGCCGAAGGTCGTACCGCGCTCCTCTTCGTAGCGGGACTTGGCTCGGAACCGTGCGTGAAGCTGCTGGCGGAAGCTGGCGCGAACCTGGACCACCGCGACCGCAGCGGCGGTCTCGCTGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGTGTTGCGAAGGTGCTGCTGGATCTGGGCGCGGATCCTGAGGTGGCGGATGACCGTGGAAGAACGGCGTTGGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGAAATCCGTTGCAGTTCGGGCGTAGGATTGGGCTTGAGGGAGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGCGGAGGTGGAGGAGATTCTTGAACGGAGAGGGAAGGGAGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTAGTGCGAATGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATCTTGTCAGAGACTACGAAGCTGGCCTTGAATACGCCGTGGCCGAGGCAGTGCTTGCGAAAAGGATCGCGGATGAAGGGACGCCGGAGTTTTTAGTTAAATGGGCCGATTTAGATGAGCCCACTTGGGAGCCCCAGGAGAATGTGGATCCTGACCTTGTCAAAGCTTTCGAGGAAACAAACAACCAGGCCCAGCCCAGTAGTAATGGGCCTGCTGTCACTGTTTCCCATCAAGATAGCCCGTAA 1224 0.5678 MPHFTPPLSLQLPHVHLQPSQTHHSKNHYTRLLMEAIFVPKPASHSHFKTKFSSNPKHFLKQQPFLPIRQNPTCFRLVTAVLQNQQQAASKDTEDESYGEVKGIIGSRALDAAAGMEYLIEWKDGHEPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNILESGDGRDVDAVDAEGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKATPKGNPLQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRGKGENLEYLVRWKDGSANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEGTPEFLVKWADLDEPTWEPQENVDPDLVKAFEETNNQAQPSSNGPAVTVSHQDSP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02585 407 SUPERFAMILY Chromo domain-like 287 334 IPR016197 -
Vimu5g02585 407 SUPERFAMILY Ankyrin repeat 144 255 IPR036770 -
Vimu5g02585 407 CDD CD2_cpSRP43_like 287 334 - -
Vimu5g02585 407 CDD CD3_cpSRP43_like 336 384 IPR030300 -
Vimu5g02585 407 ProSiteProfiles Ankyrin repeat profile. 212 244 IPR002110 GO:0005515
Vimu5g02585 407 ProSiteProfiles Ankyrin repeat region circular profile. 212 244 - -
Vimu5g02585 407 PANTHER MYOTROPHIN 86 263 - -
Vimu5g02585 407 Gene3D - 335 387 - -
Vimu5g02585 407 Gene3D - 285 334 - -
Vimu5g02585 407 Gene3D - 95 142 - -
Vimu5g02585 407 SMART ANK_2a 212 241 IPR002110 GO:0005515
Vimu5g02585 407 SMART ANK_2a 178 207 IPR002110 GO:0005515
Vimu5g02585 407 SMART ANK_2a 143 174 IPR002110 GO:0005515
Vimu5g02585 407 SUPERFAMILY Chromo domain-like 337 386 IPR016197 -
Vimu5g02585 407 ProSiteProfiles Ankyrin repeat region circular profile. 178 210 - -
Vimu5g02585 407 Pfam Chromo (CHRromatin Organisation MOdifier) domain 341 385 IPR023780 -
Vimu5g02585 407 SUPERFAMILY Chromo domain-like 95 148 IPR016197 -
Vimu5g02585 407 MobiDBLite consensus disorder prediction 384 407 - -
Vimu5g02585 407 Gene3D - 143 284 IPR036770 -
Vimu5g02585 407 ProSiteProfiles Chromo and chromo shadow domain profile. 339 395 IPR000953 -
Vimu5g02585 407 Pfam Ankyrin repeats (many copies) 198 253 IPR002110 GO:0005515
Vimu5g02585 407 SMART chromo_7 287 337 IPR000953 -
Vimu5g02585 407 SMART chromo_7 338 388 IPR000953 -
Vimu5g02585 407 SMART chromo_7 97 149 IPR000953 -
Vimu5g02585 407 MobiDBLite consensus disorder prediction 383 407 - -
Vimu5g02585 407 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Vimu5g02585 407 ProSiteProfiles Chromo and chromo shadow domain profile. 289 318 IPR000953 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02585 160 253 CAMTA Transcription Factor Family AT5G09410 37.000 1.80e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02585 K12271 - gmx:100818382 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02585 5 36087196 36089401 Vimu5g02585 5 36087196 36089401 ECH