Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02580 ATGGACTTAGCTAATTCCCATGTAGTAGTTGTTGAACAACATTCGAGATCTGTTCATACTAACAAACCAGTCAGTTCCTTGTTAAAGAAATCAGTAAGGCGAAAGTGTTTTGCTTTTACTGGGGCACATGAGATTTTCCGACCAGAGATGTGGAAAGCAGCTTTAACAGAATTAACAGCAACTGCATCTCTGATGTTCACCTTGACCACTTCCATTGTTGCATGCTTGGACTCACAGGAGACTGATCCAAAGCTTCTTGTTCCCTTTGCAGTTTTCATCATAGCCTTTTTGTTCCTACTTGTGACAGTTCCTCTCTCTGGGGGTCACATGAGTCCTGTTTTCACATTCATTGGTGCTTTGAAGGGTGTTGTCACTCTCACCCGTGCTCTCATTTACGTCTTAGCACAAATCATTGGCTCAATAATCGGTTTCTTTATACTAAAGTGCGTCATAGACCCCAAATTAGCCTACACATATTCCTTGGGAGGATGTGCCATTGATGGCCCAAGAGTGAGTTTTGGCGTTAAGCCACAGAATGCTTTGCTAGTGGAATTCACATGCACATTTGTGGTACTCTTTGTGGGGGTCACATTGGCATTTGACAAGAAAAGGTCTAGGGAGTTGGGCTTGCCAATGGTGTGTTTGGTGGTGGCAGGATCCATGGCATTGGCAGTGTTTGTGTCCCTAACTGTAACTGGGCGGGCCGGTTATGCTGGTGTGGGCCTCAACCCAGCAAGATGCTTAGGCCCGGCACTGCTTCATGGAGGACCACTCTGGCATGGGCACTGGGTTTTCTGGCTTGGGCCTTTCTTGGCATGCATGGTGTATTATCTTGTGTCTATGAACCTGCCAAAGGTGGATTTGGTCTTGCTTGAGGGAGAACATGATGTTTATGATACTTCTTTCTCAAAGGATCTGCCAGAACAATGCAATTCAGGGTTCCAAGTCCAAGTGGTTGAAATGAACGACCAATTTTCAATGGCCGTTCATGGCGGCGACACAAAGTTTCACGACAAGTTTTCAGAGTCCAAATTTCTTACCTTTATCGGTGCCCATGAAATTTTCACAGTGGAGACGTGGAAAGCAGCTTTGGTAGAGTTAATTGCAACTGGTGCACTAATGTTCACCCTAACGAGTTGCATAATTGCATGTTTGGAATCACACGAGTCCAATCCCAAGCTTCTTATTCCCTTTGCAGTGTTCATCATAGTGTTCTTGTTTTTAATTGTGATAGTTCCTCTATCTGGGGGTCATATGAACCCTATTTTCACGTTCGTTGCGGCTCTAAAGGGTATTGTCACCCTTTCTCGCGCTCTCCTTTACGTCCTGGCACAGTGCATTGGCTCAATAATTGGTTTCTTTGTACTAAAGAGTGTGATGGAGCCAAAATTAGCACAGACTTATTCTTTGGGAGGTTGTGCGATTGGTGACAAAGGACAAGGATCTTCCATAAACCCGCAGGATGTTTTATTGTTGGAATTCTCTTGCACACTTCTGGTACTCTTTGTCGGTATCACGCTGGCATTTGATAAGAAAAGGTGCAAGGAATTGGGCTTTCCAATGGTGTGTTTCGTGGTAGCAGCATCCCTCGCACTCGCAGTTTTTCTGTCGTTAACTGTAACAAGGAGGCCTGGTTATGCAGGTGCGGGCCTCAACCCGGCAAGATGTTTGGGCTCGGCGTTACTTCACGGAGGCTCACTATGGAATGGGCATTGGATTTTCTGGGTCGGGCCTTTCTTGGCCTGCATAATCTATTACAGTGTCTCCATTAGCCTACCGAAGAAGGGTTTGAATTGGGTGGATGGAGAATATGATATCTTCAACTTGGCTATGGGTTTTTGTGGAACCATCCCTAACACTTCCGTTTTAAACGATCTTCCATGA 1884 0.4533 MDLANSHVVVVEQHSRSVHTNKPVSSLLKKSVRRKCFAFTGAHEIFRPEMWKAALTELTATASLMFTLTTSIVACLDSQETDPKLLVPFAVFIIAFLFLLVTVPLSGGHMSPVFTFIGALKGVVTLTRALIYVLAQIIGSIIGFFILKCVIDPKLAYTYSLGGCAIDGPRVSFGVKPQNALLVEFTCTFVVLFVGVTLAFDKKRSRELGLPMVCLVVAGSMALAVFVSLTVTGRAGYAGVGLNPARCLGPALLHGGPLWHGHWVFWLGPFLACMVYYLVSMNLPKVDLVLLEGEHDVYDTSFSKDLPEQCNSGFQVQVVEMNDQFSMAVHGGDTKFHDKFSESKFLTFIGAHEIFTVETWKAALVELIATGALMFTLTSCIIACLESHESNPKLLIPFAVFIIVFLFLIVIVPLSGGHMNPIFTFVAALKGIVTLSRALLYVLAQCIGSIIGFFVLKSVMEPKLAQTYSLGGCAIGDKGQGSSINPQDVLLLEFSCTLLVLFVGITLAFDKKRCKELGFPMVCFVVAASLALAVFLSLTVTRRPGYAGAGLNPARCLGSALLHGGSLWNGHWIFWVGPFLACIIYYSVSISLPKKGLNWVDGEYDIFNLAMGFCGTIPNTSVLNDLP 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02580 627 PANTHER AQUAPORIN-LIKE 334 611 - -
Vimu5g02580 627 Gene3D Glycerol uptake facilitator protein. 35 286 IPR023271 -
Vimu5g02580 627 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 Pfam Major intrinsic protein 47 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 Pfam Major intrinsic protein 355 583 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g02580 627 SUPERFAMILY Aquaporin-like 357 584 IPR023271 -
Vimu5g02580 627 Gene3D Glycerol uptake facilitator protein. 347 595 IPR023271 -
Vimu5g02580 627 SUPERFAMILY Aquaporin-like 43 278 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02580 Vimu-Chr5 36065435 36069413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02580 341 585 Major Intrinsic Protein MIP AT1G73190 27.027 5.20e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02580 K09866 - gmx:100797262 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02580 5 36065435 36069413 Vimu5g02580 5 36065435 36069413 ECH