Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02573 ATGATAGAAACTTTGATTAAACTAAATTTCTTAAACTTATGTATCATCTGCCAAAGGTCTGAAGTTGAACCAATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTTTAGCGCTGGTCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTAAATGAAGAATCTTGTGAGTTGGCTCGCGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCCCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCATTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTGTTATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACAAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGAGAAACATGAGGATTCAAATGATGTCACTGCAGACCAGACTTCCGGGTTTTCTGCAGACCAGGATTTGTCATCTGGGCAAATAAAGTCTAGCGAATTGTCAAGGAGGCAAAGCAGTTGCGCTGAAGTGTGTTCGTTAGGTAGGTGCTCATCATCTAGGAGCGTTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGATAA 903 0.4186 MIETLIKLNFLNLCIICQRSEVEPMDCTAARRTQKADREKLRRDRLNEQFLALVNILDPDRPKNDKATVIDDTIQLLQDLTSQVSKLKDEYAALNEESCELAREKNDLREEKASLKSDIEKLNCQYQQQPRTVSPWTAMDHSVMVVPPSYPYPLPMPIPPSPIAMQPYPFYANQHSAVIPNPCSTYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKCKESMVEKHEDSNDVTADQTSGFSADQDLSSGQIKSSELSRRQSSCAEVCSLGRCSSSRSVQESSSSSVVHEHKG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02573 300 Coils Coil 70 125 - -
Vimu5g02573 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 80 IPR011598 GO:0046983
Vimu5g02573 300 Gene3D - 25 78 IPR036638 GO:0046983
Vimu5g02573 300 MobiDBLite consensus disorder prediction 206 300 - -
Vimu5g02573 300 CDD bHLH_AtILR3_like 35 109 - -
Vimu5g02573 300 MobiDBLite consensus disorder prediction 220 240 - -
Vimu5g02573 300 Pfam Helix-loop-helix DNA-binding domain 31 80 IPR011598 GO:0046983
Vimu5g02573 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 98 IPR036638 GO:0046983
Vimu5g02573 300 Gene3D - 79 139 - -
Vimu5g02573 300 PANTHER TRANSCRIPTION FACTOR BHLH121 18 298 IPR044579 GO:0003700|GO:0006879
Vimu5g02573 300 MobiDBLite consensus disorder prediction 241 293 - -
Vimu5g02573 300 SMART finulus 36 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02573 Vimu-Chr5 36047197 36048706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02573 20 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.148 8.21e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g02573 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02573 - - gmx:100817000 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02573 5 36047197 36048706 Vimu5g02573 5 36047197 36048706 ECH