Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02568 GAGAACTTCCGTGCTCTCTGCACAGGTGAGAAGGGAGTCGGTAGGAGCGGCAAGCCGCTCCACTACAAGGGCTCGATCTTCCACCGTGTGATCCCGAACTTCATGTGCCAAGGCGGCGACTTCACCGCCGGAAACGGAACAGGCGGTGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCGTGAAGAAGCACACCGGTCCCGGCATTCTCTCCATGGCGAACGCCGGTCCTGGAACCAACGGATCTCAGTTCTTCATCTGCACAACGAAGACGGAGTGGCTCGACGGCAAGCACGTGGTGTTCGGACAGGTCGTTGAGGGACTGAACGTGGTGAAGGAGATCGAGAAGGTCGGATCCAGCTCCGGCAAGACCTCGAGGCCGGTCGCCATCGCTGACTGTGGTCAACTCTCCTAG 420 0.5976 ENFRALCTGEKGVGRSGKPLHYKGSIFHRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVVEGLNVVKEIEKVGSSSGKTSRPVAIADCGQLS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02568 139 PIRSF Peptidylpro_ismrse 1 139 IPR024936 GO:0003755
Vimu5g02568 139 SUPERFAMILY Cyclophilin-like 1 138 IPR029000 -
Vimu5g02568 139 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 22 39 IPR020892 GO:0003755|GO:0006457
Vimu5g02568 139 Gene3D - 1 139 IPR029000 -
Vimu5g02568 139 FunFam Peptidyl-prolyl cis-trans isomerase 1 138 - -
Vimu5g02568 139 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 39 IPR002130 GO:0000413|GO:0003755
Vimu5g02568 139 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Vimu5g02568 139 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vimu5g02568 139 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 97 IPR002130 GO:0000413|GO:0003755
Vimu5g02568 139 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 138 - -
Vimu5g02568 139 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 136 IPR002130 GO:0000413|GO:0003755
Vimu5g02568 139 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 137 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02568 Vimu-Chr5 36006643 36008299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02568 1 130 U-box Gene Family AT5G67530 48.092 6.89e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02568 K01802 - gmx:106795232 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02568 5 36006643 36008299 Vimu5g02568 5 36006643 36008299 ECH