Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02559 ATGGCGTCGTCGTCTCTCATTTCCAATATTCTTTTTCTTCTTCTTCTCTGTTTCACCAAAGAAGCTTTATCTGTGTCAAAACTTTCATTGACTGATCATGGTAATTACATTAGCCGGGAAATACTGGCAGAACAAGAAGCTGATAGAGTTTATGAATTACCAGGACAACCACCAGTGAAATTCAAGCAATATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAAGCTACCCATCAACCACACAAAAAACCTGTTCTCCTATGGCTCAATGGAGGCCCAGGTTGTTCTTCAATTGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCTCAGGACAGTTTCCAGCCAAAGCTAAAGTTGAACCCTTATGCATGGAACAATGCCGCGAATCTTTTGTTTTTGGAAAGCCCTGTTGGAGTGGGATTCTCCTACACCAACACCAGCAGAGATTTGTACGAGCTCGGTGACGCCATGACTGCTAAGGATTCACACACCTTCATAGTCAATTGGTTTAGAAGATTTCCACAATTCAGATCGCACGAGTTCTACATTGCTGGCGAAAGCTATGGAGGGCACTACGTTCCACAATTGTCCGAGCTCATTTTCGATCACAATAGCAATCGTGCCAAGAAAGACTACATCAGGTTCAAAGGATTCATGATTGGAAATGCAGCAATTGACGACGAAGCAGATCAGAATGGTTTGGTAGAATATGCCTGGTATCATGCAGTGATATCCGATGGCTTATATCAGAACATTACAACAAATTGCAATTTCAAATTTGAAAATCAAACAGATGAATGCGATCACTATGTGGATAAGTTCTTCAATGCGTATGACGTTATTGACTTATACAGCTTGTACACTCCCACGTGTATCAGCAACAACAACAACAGTACATCCCCTGTCGTCAGAGGCACAACCCCAAAATCTTTTTCCAAAATTAATAAGTGGCATAGAAGACCAGAGGGATATGATCCCTGTGCATCCGATTACACTGAAGTTTACCTAAACAGGCCAGAAGTTCAAAGGGCACTACATGCCAATGTCACCAAAATTTCCTATCCATGGAGTCACTGCAGTGATGCTATCCGAGATTGGAATGACTCGCCAGCATCCGTTCTTCCTGTCATCAAGAAACTTGCTGCTAGTGGTCTGCGCATTTGGGTTTACAGTGGAGATACTGATGGAAGAGTTCCTGTGACTGGAACAAGATACGCTTTGAAAAAGTTGGGGCTCCCCATTGTTGAAGATTGGACTCCATGGTATACTAGCCAACAGGTTGGAGGATGGAGAACGATTTACGATGGGCTTACTTTTGTGACCATAAGAGGTGCTGGCCATGAAGTTCCAACCTACACTCCCAAACCAGCTCTGCAGCTGCTACGACACTTCCTTGCAAATAAGAAATTACCATCTCAACCAATTTAA 1461 0.4285 MASSSLISNILFLLLLCFTKEALSVSKLSLTDHGNYISREILAEQEADRVYELPGQPPVKFKQYAGYITVNETHGRALFYWFFEATHQPHKKPVLLWLNGGPGCSSIGYGEAEELGPFFPQDSFQPKLKLNPYAWNNAANLLFLESPVGVGFSYTNTSRDLYELGDAMTAKDSHTFIVNWFRRFPQFRSHEFYIAGESYGGHYVPQLSELIFDHNSNRAKKDYIRFKGFMIGNAAIDDEADQNGLVEYAWYHAVISDGLYQNITTNCNFKFENQTDECDHYVDKFFNAYDVIDLYSLYTPTCISNNNNSTSPVVRGTTPKSFSKINKWHRRPEGYDPCASDYTEVYLNRPEVQRALHANVTKISYPWSHCSDAIRDWNDSPASVLPVIKKLAASGLRIWVYSGDTDGRVPVTGTRYALKKLGLPIVEDWTPWYTSQQVGGWRTIYDGLTFVTIRGAGHEVPTYTPKPALQLLRHFLANKKLPSQPI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02559 486 FunFam Carboxypeptidase 384 478 - -
Vimu5g02559 486 Gene3D - 384 477 - -
Vimu5g02559 486 Gene3D alpha/beta hydrolase 44 304 IPR029058 -
Vimu5g02559 486 FunFam Carboxypeptidase 44 304 - -
Vimu5g02559 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vimu5g02559 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vimu5g02559 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
Vimu5g02559 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vimu5g02559 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 465 IPR001563 GO:0004185|GO:0006508
Vimu5g02559 486 Gene3D - 338 376 - -
Vimu5g02559 486 ProSitePatterns Serine carboxypeptidases, histidine active site. 448 465 IPR033124 GO:0004185
Vimu5g02559 486 Pfam Serine carboxypeptidase 54 478 IPR001563 GO:0004185|GO:0006508
Vimu5g02559 486 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vimu5g02559 486 SUPERFAMILY alpha/beta-Hydrolases 45 481 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02559 Vimu-Chr5 35971716 35974391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02559 346 481 Calmodulin-binding Proteins AT2G22960 29.197 1.32e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02559 K16297 - gmx:100797264 780.785