Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02558 ATGGCTTTGCCTTCGCTTATTTCCAATATTGTTCTTCTGTTTCTTTTCTCTTTCAACAAAAAAGCTTTAGCTGTGTCAAAGGTTTCAGTAACTGATAATGATAATTATGTTAGCCGGGAATTACTGGCAGAACAAGAAGCTGATAGAGTATATAGATTACCAGGGCAACCACCAGTGAAATTTAAACAATATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCATTGTTTTATTGGTTCTTTGAAGCCACTTTCAAACCAGAAGAAAAACCAGTCTTATTGTGGCTAAATGGAGACATAATGCATGTTACTGCAACCCATGTGATGAAAAGAATGAATATTTTCAGGCCCAGGTTGTTCCTCGATCGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCCCAGAACAGCAGCCAGCCACAGCTAAAATTGAACCCTTATTCATGGAACAATGCCCTGTCGGAGTGGGATTCTCCTACACCAACACCAGCAGGGATTTGTACGAGCTCGGTGACGCCATTACTGGTAATGTTACTGTCATCTATGATTTTTCAGTTGCTTCTACAAAGACTAAGGATTCACACACCTTCATAGTCAAGTGGTTCGGTAGATTTCCGCAATTCAGAACACACGAGTTCTACATTGCTGGCGAAAGCTATGGAGGGCACTACGTTCCACAACTGTCGGAGCTCATTTTCGATAACAATCGCAATCCTGCCATGAAAGACTACATCAACTTCAAAGGATTCATGATTGGAAATGCAGTATTGGACGACGAAACAGATCAAAAGGGTTATGTAGATTATGCCTGGAATCATGCAGTGATATCTGATGGATTATACCATAACATTACAACCAAATGCAATTTCAAACTTGAAAATAAAACAGCTGAATGCAATGAATATCTGGATAAGCTCTCCGATGCGTATGACGTTATTGACATGTATAGCTTGTACACTCCCTTGTGTCTCAGCAACATCAGCAGCACAACCACAAAAGCTTTTTCCAAAATTAATAAATGGCCTAAAAAGGCAGTTGGGTATGATCCCTGTGCATCTGATTACACTGGAGTTTACCTAAACAGGCCAGAAGTCCAAAAGGCACTACATGCCAATATCACCAAACTTTCATATCCATGGACTCATTGCAGTAACATTATCGATGGTTGGAATGACGCACCGGCGTCCATTCTTCCTGTCATCAAGAAGCTTGCTGCTGCTGGTATTCGCATTTGGGTTTACAGTGGAGATACTGATGGATCAGTTCCTGTGACTGGAACAAGATACAGTTTACAAAGGTTGGGGCTGCGCATTGTTGAAGATTGGACTCCATGGTATACCAGCCAACAGGTTGGAGGATGGAGAACGATTTACGATGGGCTTACTTTTGTGACCATGAGAGGTGCTGGCCATCAGGTTCCGACCTACACTCCCGAACCAGCTCTGCAGCTGCTGCAACACTTCCTTGCAAATCGGAAATTACCATCTCAACCAATTTAA 1509 0.4215 MALPSLISNIVLLFLFSFNKKALAVSKVSVTDNDNYVSRELLAEQEADRVYRLPGQPPVKFKQYAGYITVNETHGRALFYWFFEATFKPEEKPVLLWLNGDIMHVTATHVMKRMNIFRPRLFLDRLWRSRGVRTLLSPEQQPATAKIEPLFMEQCPVGVGFSYTNTSRDLYELGDAITGNVTVIYDFSVASTKTKDSHTFIVKWFGRFPQFRTHEFYIAGESYGGHYVPQLSELIFDNNRNPAMKDYINFKGFMIGNAVLDDETDQKGYVDYAWNHAVISDGLYHNITTKCNFKLENKTAECNEYLDKLSDAYDVIDMYSLYTPLCLSNISSTTTKAFSKINKWPKKAVGYDPCASDYTGVYLNRPEVQKALHANITKLSYPWTHCSNIIDGWNDAPASILPVIKKLAAAGIRIWVYSGDTDGSVPVTGTRYSLQRLGLRIVEDWTPWYTSQQVGGWRTIYDGLTFVTMRGAGHQVPTYTPEPALQLLQHFLANRKLPSQPI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02558 502 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Vimu5g02558 502 Gene3D - 400 493 - -
Vimu5g02558 502 Gene3D alpha/beta hydrolase 44 328 IPR029058 -
Vimu5g02558 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 163 IPR001563 GO:0004185|GO:0006508
Vimu5g02558 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 464 477 IPR001563 GO:0004185|GO:0006508
Vimu5g02558 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Vimu5g02558 502 FunFam Carboxypeptidase 400 494 - -
Vimu5g02558 502 SUPERFAMILY alpha/beta-Hydrolases 45 498 IPR029058 -
Vimu5g02558 502 Pfam Serine carboxypeptidase 54 100 IPR001563 GO:0004185|GO:0006508
Vimu5g02558 502 Pfam Serine carboxypeptidase 150 494 IPR001563 GO:0004185|GO:0006508
Vimu5g02558 502 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 481 IPR001563 GO:0004185|GO:0006508
Vimu5g02558 502 Gene3D - 354 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02558 Vimu-Chr5 35966182 35969015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02558 356 497 Calmodulin-binding Proteins AT2G22960 27.397 2.40e-12 63.9