Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02552 ATGCAAGATATAGTAAAAAATCTGCCCGGTCAACCTCCGGTCAATTTTAATCACTATGCTGGCCATGTAAAATTAAGGCCAGAAGAAGAGAAAGCTTTATTTTACTGGTTCTTCGAAGCTCAAGAGGCTTCATCTAGTAAACCTCTTGTGCTTTGGCTGAATGGAGGACCCGGTTGTTCTTCTGTTGCTTTCGGAGCAGCACAAGAGATTGGTCCATTTCTTGTGGATCAAGATCAGAGAATTAAGTTTAACAAATTTTCTTGGAATAGAGTTGCCAATATTATATTCTTGGAATCACCTATTAGTGTGGGTTTTTCTTACACTAATAATTCGGATGACTTGAGCAAGCTTGGTGATCGTATGGTTGCTCTGGATAACTACAATTTCTTAATTGGTTGGTTTGAGAGATTTCCAAGATTCAAATCTCATGAATTTTACATCATAGGAGAGAGCTATGGAGGACATTATGCTCCCCAGCTGGCTGAGATTATACATGAGAGAAACAAAAATGGCCCATACATAAATCTTAAGGGATTCATGATGGGAAACGCTGTGATCAACAATCCCACAGATTTAAAAGGCGTATTTGATTTTGCATTATATCATGCTATAATTTCAAAGGAAGTACACCATGGCATAAGAGAGAACTGCGATTTCAGGACAATAGATATGACACGGGAATGTACTTTGAATTTGGCCAAATTATTAAACGCCTATTCTGACATAGATATATTTAATATTTATTCTCCTGTCTGTCTCCTTGATTTTGAAACACAAGTTTCAAGTACGCCTAATGTTGTTCATTACGCTGTCTCAGAATCTGACATCGAGAATATGATTCCTTCAGTAGCTTACGATCCGTGTAAAGTTACTCAAGTCCAGAAGTATTTCAACAAGAAGGATGTCCAGAAGGCCATTCATGCATGGTTTCCTAAGATGTTGGATTACACATTATGCAGTGGAGAGAATGATGGTAGAGTTCCATTCTTATCAACGAGATACGGTTTGCAAGAGCTACAACTGAATGTGACGAAAGAGTGGAGAGCTTGGTTTGAAGGAAGAGAAGTTGGAGGATGGGTGGAGGAGTATGTGGGTGGTCTCAATTTTGCCACCATTAGAGGTGCTGGCCATCAAGCACCAATTTTTAAACCACGAGAAGCTCTTTCTCTCTTCTCCCACTTTCTCTCTGCTCAACCTCTTCCATCCTCTCGCTTCTGA 1218 0.3957 MQDIVKNLPGQPPVNFNHYAGHVKLRPEEEKALFYWFFEAQEASSSKPLVLWLNGGPGCSSVAFGAAQEIGPFLVDQDQRIKFNKFSWNRVANIIFLESPISVGFSYTNNSDDLSKLGDRMVALDNYNFLIGWFERFPRFKSHEFYIIGESYGGHYAPQLAEIIHERNKNGPYINLKGFMMGNAVINNPTDLKGVFDFALYHAIISKEVHHGIRENCDFRTIDMTRECTLNLAKLLNAYSDIDIFNIYSPVCLLDFETQVSSTPNVVHYAVSESDIENMIPSVAYDPCKVTQVQKYFNKKDVQKAIHAWFPKMLDYTLCSGENDGRVPFLSTRYGLQELQLNVTKEWRAWFEGREVGGWVEEYVGGLNFATIRGAGHQAPIFKPREALSLFSHFLSAQPLPSSRF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02552 405 SUPERFAMILY alpha/beta-Hydrolases 2 402 IPR029058 -
Vimu5g02552 405 ProSitePatterns Serine carboxypeptidases, histidine active site. 367 384 IPR033124 GO:0004185
Vimu5g02552 405 Gene3D - 303 396 - -
Vimu5g02552 405 PRINTS Carboxypeptidase C serine protease (S10) family signature 367 380 IPR001563 GO:0004185|GO:0006508
Vimu5g02552 405 PRINTS Carboxypeptidase C serine protease (S10) family signature 84 96 IPR001563 GO:0004185|GO:0006508
Vimu5g02552 405 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 158 IPR001563 GO:0004185|GO:0006508
Vimu5g02552 405 PRINTS Carboxypeptidase C serine protease (S10) family signature 97 107 IPR001563 GO:0004185|GO:0006508
Vimu5g02552 405 Pfam Serine carboxypeptidase 9 396 IPR001563 GO:0004185|GO:0006508
Vimu5g02552 405 ProSitePatterns Serine carboxypeptidases, serine active site. 147 154 IPR018202 GO:0004185
Vimu5g02552 405 Gene3D alpha/beta hydrolase 1 254 IPR029058 -
Vimu5g02552 405 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 4 384 IPR001563 GO:0004185|GO:0006508
Vimu5g02552 405 FunFam Carboxypeptidase 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02552 Vimu-Chr5 35920070 35922127 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02552 318 400 Calmodulin-binding Proteins AT2G22960 34.940 1.27e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02552 K16297 - gmx:100799746 536.954