Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02551 ATGGTTTTCACAGACAATGACAGTGCAAATGCAAGTGAAATATACAAAGCTCAAATGCACGTGAACAAATATCTCCTCGGTTTCCAAAGCTGCATGGCGGTGAAGTTTGCGACGGAGGTAGGCATAGCCGACGCAATCCACCGTCACGGAAAACCTATCACTCTCTCCGACTTGGCCTCGGCTCTGAATCTGCCGCCTTCAAAAGTCGGTGTTCTCCATCGCTTCATGCGCCTTCTAACACACAATGGCTTCTTCACCAAAACACCTTCACAGAACTCTGAAGAAGAAGAAACGTATTCTTTGACTCTTGCATCAAAGTTTCTGGTCAGAAGCAACTCCTTCTGCTTAGCAGATAATGTGGAAGTAGCGTTTCATCCAAGTATGTTTAACATGTGGAACTCCTCCAAGAAACTGTTTACAGAGGATACTCAAGTTCCGTTGTTCGAAAGCGTAACCGGAGAGAGTTACTTTGACTTCATCAAAAATGATTTTCACTTTCTGGATGTATTTCAAAAGGCTGTGGCAGCTGATTCTGAAATGATCAAACTGGGTCTCCAAGAATGCAAGCACGTGTTTGAGGGGTTGGCTTCTCTTGTCGATGTGGGAGGTGGAACCGGTGCTGTCTCCAGGCTCATACTCGAATCCTTTCCTCACATGAAATGCACAGTCCTTGACCTACCACAAGTTGTGGCCAATTTAAAAACAGCCCAAAATCTGAGTTTTGTTGGTGGTGACATGTTTGAATCAATTCCTTCTGCTGATGCAGTTTTACTCAAGTGGGTTCTGCATAATTGGGATGATGAACTTTCTATAAAGATATTGAAGAACTGCAAAGAAGCGATTTCTGGGAAAGGGAAGGAGGGAAAGGTGATAATCATAGACGTGGTAATTGATGAAGCAAGTGATGATCGAGATTTGACTGAGCTGAAGCTGAACTTTGACTTGGCGATGTTGACTTTCTTCAATGGAAAAGAAAGAGAGAAGAAAGAATGGGAGAAACTTATATACCAGGCTGGCTTCACCAGCTGCAACTTTAGTCCACTTTTTGGCTTCAAATCTCTCATCGAAGTTTATCCATGA 1080 0.4333 MVFTDNDSANASEIYKAQMHVNKYLLGFQSCMAVKFATEVGIADAIHRHGKPITLSDLASALNLPPSKVGVLHRFMRLLTHNGFFTKTPSQNSEEEETYSLTLASKFLVRSNSFCLADNVEVAFHPSMFNMWNSSKKLFTEDTQVPLFESVTGESYFDFIKNDFHFLDVFQKAVAADSEMIKLGLQECKHVFEGLASLVDVGGGTGAVSRLILESFPHMKCTVLDLPQVVANLKTAQNLSFVGGDMFESIPSADAVLLKWVLHNWDDELSIKILKNCKEAISGKGKEGKVIIIDVVIDEASDDRDLTELKLNFDLAMLTFFNGKEREKKEWEKLIYQAGFTSCNFSPLFGFKSLIEVYP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02551 359 Gene3D Vaccinia Virus protein VP39 110 359 IPR029063 -
Vimu5g02551 359 FunFam Coniferyl alcohol 9-O-methyltransferase 4 108 - -
Vimu5g02551 359 PIRSF O-mtase 2 359 IPR016461 GO:0008168
Vimu5g02551 359 PANTHER O-METHYLTRANSFERASE 31 344 IPR016461 GO:0008168
Vimu5g02551 359 Pfam O-methyltransferase domain 140 340 IPR001077 GO:0008171
Vimu5g02551 359 SUPERFAMILY "Winged helix" DNA-binding domain 12 112 IPR036390 -
Vimu5g02551 359 CDD AdoMet_MTases 198 297 - -
Vimu5g02551 359 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Vimu5g02551 359 Gene3D - 3 108 IPR036388 -
Vimu5g02551 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 359 IPR016461 GO:0008168
Vimu5g02551 359 FunFam O-methyltransferase ZRP4 111 359 - -
Vimu5g02551 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 358 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02551 Vimu-Chr5 35895851 35901959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02551 32 340 Monolignol Biosynthesis Gene Families AT5G54160 32.602 5.43e-47 161