Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02537 ATGGCGTGGAGAACTTCAAGCATAGCAAGTTTTGTTGTCACTACGCTGGTGTTGTTAGCCACAATATCTGATGCACAATTGTCTTCTAAGTTTTATGAGAGTACATGTCCCAATGCACTTTCCACCATCAGAACTGTCATTCGTACTGCAGTTTCTAAGGAACGTCGCATGGCTGCATCTCTCATTCGTCTTCATTTTCACGATTGTTTTGTTCAGGGTTGTGATGCATCGATTTTGCTTGATGATAGCTCCTCCATCGAGAGCGAAAAGACTGCACCTCAGAACTTTAATTCAGTAAGGGGATTTAACGTAATCGATCAAGCAAAAACTGAGGTGGAGAAAGTGTGTCCAGGAGTTGTATCATGTGCAGACATTGTGGCAGTAGCTGCTCGTGATGCATCATTTGCTGTGGGTGGTCCATCATGGACTGTGAAGCTTGGAAGAAGAGATTCTACCACAGCAAGCAAAATTGAAGCCACTAATGATCTTCCACGTTTTACAGACGATGTTGACATTCTTATTTCTAGATTCAACAAGAAGGGACTCACTGCCAGAGACATGGTTACTCTATCTGGTAATTGA 582 0.4278 MAWRTSSIASFVVTTLVLLATISDAQLSSKFYESTCPNALSTIRTVIRTAVSKERRMAASLIRLHFHDCFVQGCDASILLDDSSSIESEKTAPQNFNSVRGFNVIDQAKTEVEKVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRRDSTTASKIEATNDLPRFTDDVDILISRFNKKGLTARDMVTLSGN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02537 193 Pfam Peroxidase 44 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 FunFam Peroxidase 30 172 - -
Vimu5g02537 193 SUPERFAMILY Heme-dependent peroxidases 26 192 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 Gene3D - 30 163 - -
Vimu5g02537 193 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vimu5g02537 193 ProSiteProfiles Plant heme peroxidase family profile. 26 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Plant peroxidase signature 185 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 Gene3D Peroxidase, domain 2 164 192 - -
Vimu5g02537 193 PANTHER PEROXIDASE 72-RELATED 22 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Haem peroxidase superfamily signature 186 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02537 193 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02537 Vimu-Chr5 35822865 35823650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02537 11 192 Peroxidase AT1G14550 63.388 3.38e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02537 K00430 - gmx:100811641 305.449