Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02529 ATGGTTGGGAATTCTTCTGCAGCTAGTAATAGTGGAAGAAAGACAGTAATTTCAATGTACTTGAGGAGAATACAATGCAGGAGAGATCGATTATGGGCTCTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGATTCTCTGATCATCAATACTTTCAATCTTTGTCCCCAAAGACTGCTGTGGAAGAGTATGCTTCACATGGCAGGATCATCAGAGAACGTCTTTTAGGTTCATATTCATGTAAACACACTTCATCTACAATTACTTTTGCTGCTCAGGACAAAAGGCCTAGATTATGTCATAAAAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGTTAATGATGGAACCAACTTTGATAAAAGGCAGAATCAACAAGAGAAGTTTGGGAAAGAGGTTGAGTACTGCAATGCGCATGCACGACTTGGAGAACAGGAACAAGAGGAATGGTTTAATAATGAGAGGCAAACTATAGAAAATAAAAGGAGAGAATCACCGTTTTTGACAAAGAGGGATAAGTTTAAAAATGAGTTCACAAGGAGAATTATTCCTTGGGAAAAAATAAATATTTCCTGGGACACATTTCCTTATCATATTCATGAAAATACAAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTGGCTTCAACTTTTGGTACTCGGCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTTTTAGTGCTCGATAATAGCATCCTTGCTCCTTATGACATTGATGATGATTTATCATCGGACTACGAGTCTGATGATGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTCGAATCAGAGAATGATGATGATAATGAAGCCAGCAATGAAGAAGAGTGGGCTAGCAGTACAGAGGCAAAGTCAGATGCAAGTGACAATGAAGATGCAGTAGCAGCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTCCCTTACAATGTAGAGGAATTTGAGAAGATTGTGGCTGGAGAATCTGAGAGTTCCGAATCCTCCAAGTCTAATTCTAATGATACCAAATCTGCTGATAAGTCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAGGTACACTGGGCCATCTGTTCAAGTTACAGACGAGGATAGAACAGTGGTGCTATTGGTAATTGTAGAGGAAGTGGTGACACCGCACCTGGTTATACTGGGGAAGATACCAACATCTGATGGTCCAACTAATGCTTATACTATTATACACGGCAGACCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTCAATGGCGATCGAGTTGCAGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAACCCCAGTGATGATCATACCAAACCCCCAATTTATTGGATTCATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCTAAGTCAAACCGAAAGGAGTTTTTTCATAACGTTGAGGAGATGTTTGACCAGTTATCTGGTCCTATAATATTGATTTGTGGGCAAAATAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTACCAAACTTTGGACGTGTGGCTAAGTTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGATGAAATTAGCAAGCTCTTTTCTAATGTTCTGAGTATACATCCACCCAAGGATGAGAATCAGCTGGCAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTGACTTCACGTAGTAATTTGAGTATACTACGGAAGGTTCTCGAAGAACATCACCTATCATGCATTGACCTTTTACATTTAAATACTGATGGCATCGTTTTGACAAAGCTCAAAGCAGAAAAAGTAGTAGGCTGGGCAAAAAATCACCACTTGTCGTCATGCTTGAATCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGACAAGCCAGGAAACAATGTCACGGAAGTCTTCTCAGAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCACTTCATGAACTCGTAATTCTTCCAATGAGAAGACCAGAGCTTTTCTCTCGAGGAAATCTTTTACGGCCCTGTAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGTAAGACCCTTCTGGCGAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAACTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTAGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAATTCATGGCAGCCTGGGATGGATTGAGGTCAAAAGAAAACCAACGAATCCTTATTCTTGGTGCAACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCCGATGCTGAAAATCGGATGAAGATTTTAAGCATCTTTCTAGCACAAGAAAATTTGGATTCTGAATTTGAGTTAGACAAACTTGCTAACTTGACTGATGGATACTCGGGAAGCGATTTGAAGAACCTCTGTATTGCTGCAGCGTATAGACCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGAGTATCCTTTGGTTTGCACAGAAAGCCAGTAATGATGGTACAACTTCAATACTAAGGCCTCTCAATTTGGATGATTTTGTTCAGTCAAAAACCAAGGTGGGTCCATCAGTTGCGCATGATGCAACAAGCATGACTGAGTTGAGGAAGTGGAATGAAATGTATGGAGAAGGTGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3255 0.4061 MVGNSSAASNSGRKTVISMYLRRIQCRRDRLWALVLQPSKYFFRPRFSDHQYFQSLSPKTAVEEYASHGRIIRERLLGSYSCKHTSSTITFAAQDKRPRLCHKSTQLRAYSSESDGRNASEDKQVHVNDGTNFDKRQNQQEKFGKEVEYCNAHARLGEQEQEEWFNNERQTIENKRRESPFLTKRDKFKNEFTRRIIPWEKINISWDTFPYHIHENTKNLLVECAASHLRHNKLASTFGTRLSSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSDYESDDDNAESGEEGSLESENDDDNEASNEEEWASSTEAKSDASDNEDAVAAAEAHLKKVKAAVLRKLVPYNVEEFEKIVAGESESSESSKSNSNDTKSADKSGCQLKKGDRVRYTGPSVQVTDEDRTVVLLVIVEEVVTPHLVILGKIPTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDRVAVILDINEDKVNEGEVENPSDDHTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSNRKEFFHNVEEMFDQLSGPIILICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEISKLFSNVLSIHPPKDENQLATFKKQLEEDKKIVTSRSNLSILRKVLEEHHLSCIDLLHLNTDGIVLTKLKAEKVVGWAKNHHLSSCLNPSVKGERLCLPRESLEIAVSRLTSQETMSRKSSQSLKNLAKDEFESNFISSVVPPGEIGVKFDDVGALEDVKKALHELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILSIFLAQENLDSEFELDKLANLTDGYSGSDLKNLCIAAAYRPVQELLENEKKSILWFAQKASNDGTTSILRPLNLDDFVQSKTKVGPSVAHDATSMTELRKWNEMYGEGGNRTKSPFGFGS 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 115 137 - -
Vimu5g02529 1084 ProSitePatterns AAA-protein family signature. 926 945 IPR003960 GO:0005524|GO:0016887
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 377 407 - -
Vimu5g02529 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1022 IPR027417 -
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 380 396 - -
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 291 343 - -
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 291 326 - -
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 108 137 - -
Vimu5g02529 1084 Gene3D - 782 1065 IPR027417 -
Vimu5g02529 1084 SMART AAA_5 819 956 IPR003593 GO:0016887
Vimu5g02529 1084 Pfam ATPase family associated with various cellular activities (AAA) 823 953 IPR003959 GO:0005524|GO:0016887
Vimu5g02529 1084 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 187 1077 - -
Vimu5g02529 1084 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 781 957 - -
Vimu5g02529 1084 Pfam AAA+ lid domain 978 1011 IPR041569 -
Vimu5g02529 1084 MobiDBLite consensus disorder prediction 328 343 - -
Vimu5g02529 1084 Gene3D - 955 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02529 Vimu-Chr5 35770970 35790588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02529 782 1033 Calmodulin-binding Proteins AT3G56690 38.431 1.21e-41 164