Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02528 ATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTGGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAAAATGGTTCGCTTGCAAATATTATCAAGCCCAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGAGTTATTCATCGGGATATTAAAGGTGCAAACATACTGACAACTAAGGAGGCAAGCTTTCTAATTTTATGTTCTTGTTATACACTAGGGCTTTGTGTTTTGGCAATTATTCTGGCTGGTCTTGTGAAACTAGCTGATTTTGGTGTTGCTACAAAGCTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCACCCGCCAATTCCTGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGCAACACTAAGAAATATAGAGGAAGATGACTCTGCAGATGCAGAAGATTCTGGTGGTTATCATAAGAGTGCTTATGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGATTTCATCTGTGGCTGCTCAGGGCAGAAAATCTCATGAAGACAATGCTTCAGTTCCTAATTTTTCCGATGAAAGAACACAAAAAGAAGATCATGTTCCATCAGATCAGGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGCAATCTCTCTCCAAATAGAGAAGTTGGTAATTCCGAGCCTACTGGCAATCACGAAATTTCAAATGAAGGACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTAACAAATCATTTGCTTTTGGGCCAAGAGGTCAAGATAATGGTTCCCTCAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGATCCACCAGGAGATGCCTACTTAGATGATTTATTCCACCCATTAGATAAACAACCTGGCGATGTTGCAGCAGAGGCATCCACATCTACATCCACTTCTCATATGGTTAAAGGCAACACATCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGAAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAGTGGTGGGAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAGCTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTAACCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTGACAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGAGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCGAGTTCTTTGACATTACAAATGTTTATAGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGCGTGATGGCATCTAGAGATAGTAGCCATTTGGCCGTGCACCCAGAGCTTGGATTTTATGGAGAGCTGACTTTTCACGTTATGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCTGCTGGGGGTGGATTTTCAGTTGATGGTTCGGCACAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAAAGAGGCGTTGCTATCTTCAGTAGACCAGCAAGATTCCTCTAAAGTGAGACGTGGAGTCCTTGATCATCACTTAGAACAGTCACATCCTTCATCCTCCAATCCTCGAAGATCAGATGCTAACTACTCCATAGATGATGCCATGTCATTGGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGCGGGTGCATTAAAAGAGCGAGAGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCGGATGTTGAATCCAGACAACGTAGCTCCACTAACAGGGCATCAACTGATAGGCCACCAAAATCAACAGAACCATCATCAAATGGGTTATCAGTTACAGGAGCTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGTTTTTCTGGACAGCTCGAGTATGTACGTCAGATGTCAGGATTAGAAAGACATGAAAGTGTACTCCCTTTGTTACATGCATCCGAAAAGAAAACGAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAACGGAAGTCTTGACTCCAGTTCTAGAGTTTCTCATAAAGTCACTCCAAAGAAATTGGGGACTTTCAATTCCAGTGAAGGAGCTGCTTCCACATCTGGGATTGCATCACAGACAGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGCGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCACGAGGTCTTGAATGCCCTATTCAATTTATGCAAGATAAATAAGCGAAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCATGTCCAGAGCGGCATTTTGTGCACATATTGGAGCCATTCTTGAAAATAATCACAAAATCTTCGAGGATTAATACGACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTAAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAAAATGATCTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCCCTACACATAAACACCGTTTTGTAA 4245 0.417 MLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEASFLILCSCYTLGLCVLAIILAGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSATLRNIEEDDSADAEDSGGYHKSAYEGSSVEKEDSGKEISSVAAQGRKSHEDNASVPNFSDERTQKEDHVPSDQVLTLAIREKSLLQTGSSNLSPNREVGNSEPTGNHEISNEGLHEVMMNGEVGSPQSRGMASKVGGKDSSVNNGNKSFAFGPRGQDNGSLKAMKMPTTVEGNELSRFSDPPGDAYLDDLFHPLDKQPGDVAAEASTSTSTSHMVKGNTSTTDGGKNDLAKELRATIARKQWEKESEIGQANSGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFNQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYSVMASRDSSHLAVHPELGFYGELTFHVMEMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSAGGGFSVDGSAQRPRSGILDPTHPYINQKEALLSSVDQQDSSKVRRGVLDHHLEQSHPSSSNPRRSDANYSIDDAMSLEKNSTQTPRESSAGALKERENMDRWKTDPSRADVESRQRSSTNRASTDRPPKSTEPSSNGLSVTGATHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDSSSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02528 1414 Gene3D - 1224 1409 IPR011989 -
Vimu5g02528 1414 Pfam Protein kinase domain 4 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02528 1414 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 921 947 - -
Vimu5g02528 1414 SMART arm_5 1199 1238 IPR000225 GO:0005515
Vimu5g02528 1414 SMART arm_5 609 649 IPR000225 GO:0005515
Vimu5g02528 1414 SMART arm_5 1153 1197 IPR000225 GO:0005515
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 421 437 - -
Vimu5g02528 1414 SUPERFAMILY ARM repeat 1283 1396 IPR016024 -
Vimu5g02528 1414 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Vimu5g02528 1414 SMART serkin_6 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02528 1414 FunFam MAP3K epsilon protein kinase 1-like 1068 1409 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 298 321 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 481 511 - -
Vimu5g02528 1414 Gene3D - 571 817 IPR011989 -
Vimu5g02528 1414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 895 920 - -
Vimu5g02528 1414 ProSitePatterns Protein kinases ATP-binding region signature. 6 29 IPR017441 GO:0005524
Vimu5g02528 1414 SUPERFAMILY ARM repeat 581 1306 IPR016024 -
Vimu5g02528 1414 CDD STKc_Cdc7_like 1 269 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 287 354 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 405 445 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 486 510 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 369 392 - -
Vimu5g02528 1414 Gene3D - 1075 1223 IPR011989 -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 369 393 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 881 947 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 337 353 - -
Vimu5g02528 1414 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 721 - -
Vimu5g02528 1414 MobiDBLite consensus disorder prediction 802 827 - -
Vimu5g02528 1414 SUPERFAMILY Protein kinase-like (PK-like) 2 285 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02528 Vimu-Chr5 35752621 35769455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02528 1 1414 MAP Kinase Kinase Kinase AT3G13530 69.145 0.0 1907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu5g02528 Pkinase 2.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02528 - - gmx:100813256 2430.59