Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02523 ATGGCAGTCGCATTTTGTATAACGGCTGGTGGAAGTGGAATGGGTATGGTGGAAAAGGTGGGGCAGCGGCATGGAGAAGATCTTTGTCAAGCTGATTCGAAATATTTATCCATGCAATGGTCCTTGCTTTTGCCAACCAGTGATGCACTACAAGCAAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCTGGTCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGGTGGCAAGCCATTGGTTCGAAAATCTATCATAGTGACTCCCACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGTGTTCGTCTTGTCGCTCTATGTGAGAGTTCAAGAGAAGATGTTGTCTCTGCGATTGACAGTTTTACAAATCCCGAAAGAAATTTACAGGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCTCCTCCCTGCAAACGAAGAATTTTATTGTCGGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGTGGCCACTGTTGAAGAGAAGAAGATAGGTGCTGAACGCCCTGCTGAATTAAGTGTCAATGCTGCCTCTATTACTTCAGGTAAATCTGGAACCGAGCAAAATATGGACTCTGCAGCCACTGTGACAGCATTTGGATTGATGCAGCAGAAGTGCCTTGGTTTGTCACTTTGGGCAACTAAAGGAATTGCTTTTACTCTACAACTCTGCTGTGAAGAACTGATTGGAAATATTCAAGAATGCCACCAAATTTGTTGCCTCTTGTTGTTACATCTATTAGGACAAGGATTTTGGTTGAAAAGTGAACGAAGTGGTCTGCTGGCTGCTGCTATTGGTTGCCTTACGTTAGCTTTGTCTACCTCACCATCTTCTGCTCAAAAAAGGAATATGCTCTGTGACGAGGTTTCTTCAGGTCATATTGAGACTGAAAAGAAGTTTGGTGTACTTTCTACCTTATTTGAATATTCGATACAATCGAGTTGTCTAACCATTTGCCTTGAAGCCCTGTAG 1290 0.4178 MAVAFCITAGGSGMGMVEKVGQRHGEDLCQADSKYLSMQWSLLLPTSDALQAREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFGGKPLVRKSIIVTPTSLVSNWEAEIKKWVGESVRLVALCESSREDVVSAIDSFTNPERNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAAPPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPVATVEEKKIGAERPAELSVNAASITSGKSGTEQNMDSAATVTAFGLMQQKCLGLSLWATKGIAFTLQLCCEELIGNIQECHQICCLLLLHLLGQGFWLKSERSGLLAAAIGCLTLALSTSPSSAQKRNMLCDEVSSGHIETEKKFGVLSTLFEYSIQSSCLTICLEAL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02523 429 Gene3D - 49 286 IPR038718 -
Vimu5g02523 429 SMART ultradead3 41 247 IPR014001 -
Vimu5g02523 429 FunFam DNA repair and recombination protein RAD54 41 285 - -
Vimu5g02523 429 PANTHER SNF2/RAD54 FAMILY MEMBER 53 279 - -
Vimu5g02523 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 278 IPR027417 -
Vimu5g02523 429 CDD DEXHc_RAD54 53 287 - -
Vimu5g02523 429 Pfam SNF2-related domain 67 257 IPR000330 GO:0005524|GO:0140658
Vimu5g02523 429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 239 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02523 Vimu-Chr5 35644771 35656673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02523 72 236 RAD5 or RAD16-like Gene Family AT1G02670 29.670 1.23e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu5g02523 SNF2_N 2.7e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02523 K10875 - gmx:100781631 416.387