Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02516 ATGGATGGTGCAAAGAAAGGCCGTGCTGTCCTGGTTTTCACAGATGGAGCGGTTCTTTCCGTCAGTCAAGTGTTTGAGACAATTACAGAACTTGGCAATGAAGGGAGCAATGAAGGGGTTCAGGGATCTGATCCTCTAGTTCTTACATCTGCCTCGCTTTTAAGCAATTTGCCATTGGAGTCTTCCTCTGTTGATTCTGCTATTTTAAACTGGTTGTCAAGTGATTGTCCTGGGGACCAACTGATTCAAGAAATTCTTAGAGTGTTAAAAGTGGGTGGTATAATTCTCATTCGCAAGTCATCTCAGTCTACTGTGGGCTCATTTGATAAGATAATATCTGATCTTCAGAGCAAGTTATTGCTGGCAGGGTTTTCAGAAACACAAGTTTTACAATCAACTGGGATCAAAGCAAAAAAGCCCTCATGGAAAGTTGGTTCATCATTTTCCTTAAAGAAGGTGATAAAGAGTTCACCTAAAATGCAAATTGATGTTGATTCGGATCTTATAGATGAAGATAGTCTTTTAACTGAAGAAGATTTGAAGAAACCCCAGCTACCGCCAGGTGATTGTGAAATTGGCAGTACTAGAAAAGCTTGCAAAAATTGCACCTGTGGGAGGGCTGAAGAAGAGGAAAAAGTTTTGAAGTTAGGATTGACAGCAGAACAGATTAATAATCCTCAATCAGCTTGTGGCAGCTGTGGGCTCGGAGATGCATTTAGATGCAGTACCTGTCCTTATAAGGGATTGCCTCCCTTTAAATTGGGCGAGAAGGGGAACATAGCTGAAACTGCAGAAGGAAAAGCACCGGAAAAAGATCATAAATCACAGATCGATCACCTCCGATTCCGATTCCGGCTACGTTCTCGCATTTATTATTTGTCTGCTTCAACTGCTGCTCAGCTCAAGCAACATAAAACAATGCTTCTAGACAAGAATGCGATTCAGGAAACCCATTACAAGGTTCTTAATGTGAAAGAAGATGCAAATTATGAAGAAATTCGTGCCAGTTATCGCAGTGCTGTACTCAGCTTACATCCTGATAAGCTATTGAAGTCGTCAGAGACATCCAACAGTAATGAAATAAATGGAGAGAGATTTCTGAAAGTACAGAAGGCATGGGAAATTCTGAGTGATTCAAGCTCCCGCTCTTGTTATGATAAGGAGCTGCGAAGCACAAGACAGGATTTCTTGGCTGCTGAAGTTGCGGAGGATTTAAGCTTAGAGGATATGATGGTTGAAGATGCTGGAGAAGCATTGGAACTGTTGTATCAATGCCGATGTGGTGATTACTTTTCTGTAGATTCATTGGAACTGAAGAAAATGGGATATTCCTTATTGAGGGAGGGAAGTGGGATATCTATACTCAATGTTGATACTTTACCAGGATCAGTGATTCTTCCTTGTGGATCTTGTTCATTGAAAGCTCGTCTGTTAATCAGTATGGATGACATTTGA 1455 0.411 MDGAKKGRAVLVFTDGAVLSVSQVFETITELGNEGSNEGVQGSDPLVLTSASLLSNLPLESSSVDSAILNWLSSDCPGDQLIQEILRVLKVGGIILIRKSSQSTVGSFDKIISDLQSKLLLAGFSETQVLQSTGIKAKKPSWKVGSSFSLKKVIKSSPKMQIDVDSDLIDEDSLLTEEDLKKPQLPPGDCEIGSTRKACKNCTCGRAEEEEKVLKLGLTAEQINNPQSACGSCGLGDAFRCSTCPYKGLPPFKLGEKGNIAETAEGKAPEKDHKSQIDHLRFRFRLRSRIYYLSASTAAQLKQHKTMLLDKNAIQETHYKVLNVKEDANYEEIRASYRSAVLSLHPDKLLKSSETSNSNEINGERFLKVQKAWEILSDSSSRSCYDKELRSTRQDFLAAEVAEDLSLEDMMVEDAGEALELLYQCRCGDYFSVDSLELKKMGYSLLREGSGISILNVDTLPGSVILPCGSCSLKARLLISMDDI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02516 484 SUPERFAMILY CSL zinc finger 402 483 IPR036671 -
Vimu5g02516 484 Gene3D DnaJ domain 302 394 IPR036869 -
Vimu5g02516 484 SMART dnaj_3 316 381 IPR001623 -
Vimu5g02516 484 FunFam DNAJ heat shock N-terminal domain-containing protein-like 395 483 - -
Vimu5g02516 484 Pfam CSL zinc finger 404 478 IPR007872 -
Vimu5g02516 484 SUPERFAMILY Chaperone J-domain 304 385 IPR036869 -
Vimu5g02516 484 Pfam Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis 189 257 IPR046408 -
Vimu5g02516 484 Pfam DnaJ domain 317 386 IPR001623 -
Vimu5g02516 484 PRINTS DnaJ domain signature 361 381 IPR001623 -
Vimu5g02516 484 PRINTS DnaJ domain signature 337 352 IPR001623 -
Vimu5g02516 484 PRINTS DnaJ domain signature 319 337 IPR001623 -
Vimu5g02516 484 PANTHER ANAMORSIN 8 261 IPR007785 GO:0005737|GO:0016226|GO:0051536
Vimu5g02516 484 Hamap Fe-S cluster assembly protein <gene_name> [DRE2]. 7 273 IPR007785 GO:0005737|GO:0016226|GO:0051536
Vimu5g02516 484 Gene3D DPH Zinc finger 396 484 IPR036671 -
Vimu5g02516 484 Gene3D Vaccinia Virus protein VP39 2 149 IPR029063 -
Vimu5g02516 484 CDD DnaJ 317 378 IPR001623 -
Vimu5g02516 484 ProSiteProfiles dnaJ domain profile. 317 389 IPR001623 -
Vimu5g02516 484 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 401 480 IPR007872 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02516 318 386 C2H2 Transcription Factor Family AT1G74250 39.130 3.61e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02516 K22746 - gmx:100802432 417.157