Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02510 ATGTTATCAGATATGTATGTTGTGGTGACTGTTAGGAAAGTAGCAACAAGTCTGTTTAAGATCCTGTTGAAGTACAGGCCAGAGGATAAAGCAGAAAAGAAGGAGAGACTTTTGAAAAGGGCACAGGCAGAGGCCGAGGGAAAAACTATCGAGGCCAAGAAGCCTATTAATGTGAAATATGGTCTCAACCATGTTACCTACCTCATTGAGCAGAATAAAGCACAGCTTGTTGTGATTGCTCACGATGTGGACCCAATCGAACTCGTTGTGTGGCTTCCAGCATTGTGCAGGAAAATGGAAATCCCATACTGCATTGTGAAAGGAAAGGCTCGCTTGGGAACGGTCGTCCACAAGAAAACAGCATCTGTTTTGTGCTTGACAACTGTAAAGAATGAAGATAAATTGGAGTTCAGCCGAGTCTTGGAAGCTATCAAGGCTAACTTCAATGACAAGTATGACGAATACAGAAAGAAATGGGGTGGTGGAATCATGGGATCCAAATCCCAAGCCAAAACCCGGGCAAAGGAAAAACTTCTGGCCAAGGAAGCTGCTCAGAGAATGTCTTAG 567 0.4392 MLSDMYVVVTVRKVATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTIEAKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02510 188 PRINTS Ribosomal protein L7A family signature 115 139 IPR001921 -
Vimu5g02510 188 PRINTS Ribosomal protein L7A family signature 147 167 IPR001921 -
Vimu5g02510 188 PRINTS Ribosomal protein L7A family signature 20 33 IPR001921 -
Vimu5g02510 188 PRINTS Ribosomal protein L7A family signature 54 74 IPR001921 -
Vimu5g02510 188 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 46 135 IPR004038 -
Vimu5g02510 188 Coils Coil 31 51 - -
Vimu5g02510 188 PRINTS Ribosomal protein L7A/RS6 family signature 58 72 IPR018492 -
Vimu5g02510 188 PRINTS Ribosomal protein L7A/RS6 family signature 77 90 IPR018492 -
Vimu5g02510 188 PRINTS Ribosomal protein L7A/RS6 family signature 103 117 IPR018492 -
Vimu5g02510 188 PRINTS Ribosomal protein L7A/RS6 family signature 93 103 IPR018492 -
Vimu5g02510 188 FunFam 60S ribosomal protein L7a 5 163 - -
Vimu5g02510 188 Gene3D - 9 182 IPR029064 -
Vimu5g02510 188 ProSitePatterns Ribosomal protein L7Ae signature. 96 113 IPR004037 GO:0042254|GO:1990904
Vimu5g02510 188 SUPERFAMILY L30e-like 18 159 IPR029064 -
Vimu5g02510 188 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02510 Vimu-Chr5 35467684 35468729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02510 12 188 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 86.441 3.06e-114 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02510 K02936 - gmx:100792324 328.176